LOC118946467 (LOC106598515)


Basic Information

Item Value
gene id LOC118946467
gene name LOC106598515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33165519 ~ 33166725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971005.1
CATCGACCTTTGGGGTTAAGCCCAGATCGTTGTATTTCCTTTTTTGTTTTTGAGGAACAGTATGGGTTATATTATGTTAGTTTCCCTCAGAATATTTTTCATCCTTTAGCATTACATTTGCTTGCATTTAATGATACTATTGTAATTCTGATAATGTACAATTTTCCAGGTGCTGTGTGTCGAATTCCTGGTGTCGCTGGGGACAGCGGTTCTCACTATTGTTGCCATGCCATTCTTCGGCATTGTGACCAATGTGACGATGCTGAACAGCATCAGCATCCTGTCCTCCATCTTCCAGGTGGGCGCTCAGTGCATTGCGAGGGAGAGGAAGCGATTCATAGTGCCCCCACTCATCTCATTAGTCCTCATACTGTCAGGCTACGTGCTCTTCATCCTCAGTTACCTGCTGAAAGAAGATAGGGGGATGAACGTCTGGATCGGATTGGCAATAATGGGGACCATCTTTGTCTCGCTGAACTGGTGGGAGAACTACAGCACCCTCTTCAAAAGCTCCTTCCTGAACAGTATATCTGAAGACATAGCGAGGTGCAGGAATGTGGTGAGCATCCTCTCTAGTCTGGTCCGGATTATGGTCACTGCAGCCGTGGTCGGGGCATACATCCCTCTGTCTGGCAGAGTCTGGTCGTCGGTGACATCAGTTCCAGGAGATGTGAAGTTGGTGATCCTGATCTTGGTGGCCGTCCAGATAGTGTCCTCCGCTCTGTGCCATTGGTTCGTGGTGGTGGCTTGCAAAATGCACGCCATGCGGCGAAGCTTCCTGTTACCCATGTACCTGGCTTCGTTAGGTGTTCTGGCAGCGTTCGTCGCTCCTGTCATTATCTTCTTCCAGAATTCAAGTGACTCCAGAGGTGCTAACTACACCATCACAGAGTACTGCAATGATATCACATATGGCAGGGGCCTAAGCGGCGATACTTTCTGGTTTGAGAGGCTAGTCAGGGACATCACCCATACCCTCTGTCCCCAGCACATGACCGACCTAACAGAAATGGGCCTCTTGGGAGGCTCTGCACTCTGCTGGTGGTTGGGTTGGATGCTGTGCACAATGCACATCTGGTTCCTCCAGCTTCAGCGCATCGAGAGGACACAGAATCTGTTTGTGCGGAGGATGTACGAGGGGCCCTTTCTGGAACAGTCCATGCTGCTCAACACGCGTTTTGAGATTCAGAGGAAGAAAACAATGTAA

Function

NR:

description
uncharacterized protein LOC110487592

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971005.1 True 1207 mRNA 0.50 1 33165519 33166725

Neighbor

gene id symbol gene type direction distance location
LOC110488341 ke4 coding upstream 48517 33107620 ~ 33117002 (+)
LOC110488340 LOC106569947 coding upstream 83323 33073339 ~ 33082196 (+)
LOC110488339 LOC107726165 coding upstream 101670 33061342 ~ 33063849 (+)
LOC118946511 NA coding upstream 108380 33056299 ~ 33057139 (+)
LOC100136003 LOC100194553 coding upstream 114158 33042382 ~ 33051361 (+)
LOC110487593 LOC106570137 coding downstream 126 33166851 ~ 33175323 (+)
LOC110488342 LOC106588394 coding downstream 13645 33180370 ~ 33213019 (+)
LOC110487595 LOC106569953 coding downstream 72928 33239653 ~ 33283949 (+)
psmb13a LOC106569958 coding downstream 186505 33353230 ~ 33356613 (+)
psmb8a psmb8b coding downstream 190709 33357434 ~ 33360834 (+)
G2320023 NA non-coding upstream 22350 33142894 ~ 33143169 (+)
G2320022 NA non-coding upstream 22633 33142585 ~ 33142886 (+)
G2320021 NA non-coding upstream 24907 33140182 ~ 33140612 (+)
G2320019 NA non-coding upstream 32760 33132399 ~ 33132759 (+)
G2320018 NA non-coding upstream 33545 33131706 ~ 33131974 (+)
G2320064 NA non-coding downstream 57580 33224305 ~ 33224508 (+)
G2320162 NA non-coding downstream 288766 33455491 ~ 33455772 (+)
G2320163 NA non-coding downstream 289169 33455894 ~ 33456189 (+)
G2320164 NA non-coding downstream 290064 33456789 ~ 33456990 (+)
G2320165 NA non-coding downstream 293035 33459760 ~ 33459991 (+)
G2319921 NA other upstream 222127 32942203 ~ 32943392 (+)
G2318792 NA other upstream 1211006 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 1223605 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 1544382 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1824988 31334757 ~ 31340531 (+)
G2320160 NA other downstream 284434 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1170385 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 1682453 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 1803496 34969069 ~ 34972560 (+)

Expression


Co-expression Network