LOC110487593 (LOC106570137)


Basic Information

Item Value
gene id LOC110487593
gene name LOC106570137
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33166851 ~ 33175323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971006.1
ATGTGGCATGAGAGCTATGACGAAATGATGAAAATGATCATCTCAATGTTCAGACTGGACAAATACAGGCCAAGGAAAGACACCAACAATGATGTGAGCTTTGAGTCTCACATTTACTTTGATGATGCTTTTAAAGACGTGAAAGGTAGTAAAGGCCGGCATGTGAACGAATACGCAGAGGACCTGGTGGAGGTTATCCGAGAGGTTTACAATATCTTCAATGAGAAGGATTCATGCATCTTCAGAGAGAGCCCACCCCTTCCATGCCAGAGTATCCTGCACACCCCTTACGGAGGTCGACTGGAGTATATCCTCCCTAATGGCAACCTGCTGATGGTGCACTTTAAGGACAAGCTACTGATCCGCCACAAGAAGAGATGGTCTCAGATTATGTACTTGTACTACATTCTCGGCTGGCGACTCACCAGGAAGTATTTCAAGAAGTTTGAGCAGGGTGGAGATGAGAGCGAGCTGAGGGAAAAGATGATGAAAGAGAAGGACAATACCTATCTCCTGGCTTTGGATGGGGACACCGACTTCCAGCCCTATGCTGTAATGCTCCTAATAGATCGGCTGAAACTTTATCCACGTGTGGGTGCGGCATGTGGGAGGATTCACCCGACAGGCACAGGTCCTATGGTATGGTATCAGAAGTTTGAGTATGCGGTGGGCCACTGGCTTCAGAAGACTGCAGAGCACGTGTTTGGTAGCGTGCTCTGCAGCCCCGGCTGCTTCAGTCTGTTCAGGGGCACAGCCCTCATGGACGACAACGTCATGAAGAGATACACCACTAAGGCCACGGAGGCTAGCCACTACGTACAGTACGATCAAGGTGAAGACCGCTGGCTGTGCACTCTCCTGCTGCAGCAGGGCTGGAGGGTGGAGTACAACGCTGCGTCCGACGCCTACACCAACGCCCCCCAGGACTTCAAGGAGTTCTATAACCAGCGTCGGCGCTGGGGGCCCTCCACCATGGCCAACACCATCGATCTACTGGGCTCAGGGTCTCTGACCTCCCAGAGGAACAGCTCCATCTCCAAACCCTTCATCCTCTACCAGATTCTCAGCATGGCCGCCTCCATCCTAGGCCCGGCCACAATCTGCCTAATGATCTCAGgAAGCTTGTCGTTCATACTAGACATCGATCCCAACGTTGCTTTGGTCCTTGCAACAGTGCCCCCTGTGGTGTACCTGTTGCTGTGCTTCAAGCTGAAATCGGACACACAGATCGCCATAGCAGCCGTCATGAGTGTCTTGTACGCTTTCCTCATGATAGGAACCGCTTTGTCCATCATAGGTGCTATGGTTGAGCAGCAAACCATTTGGACTCCTAGCGGCCTGTTTATCATAGGCCTGGTGCTGATGAACATCATCACAGCAGCGCTCCACCCCAAGGAGTTCCATCTGGTCATCTACGGCCTCCTGTACTTCATCTCTATCCCCAGTGGCTACCTCCTGCTGACCATCTACTCCATGGTCAACATGAACAATGTGTCCTGGGGCACTCGGGAGACAGGTGTCCATGTCGCTGCTCCACCACCAGCCAAGGCCATCACACAGCGCATCCTACAGGCCAAGTGCTGCAAGTTTCTCTGCTGGGACAGTGGAAAAGTGGCAGACCAGAATGGTCAGTTGCCAGAAACAGTTGTGTTGGCTAATGAGCCAAAGGTGAACCCTAATCTGACCTCTCAGGACAATAACAGGAATGTGGAATTATGTTCTCATCAGTCTACTGAACAAAACTTTGTAACACAACTGCAGAAGAAGTCCTATGACTTCCCTCTAAATGAAGATTTTCTTGTGAAGGAAGAGGAGGACTTTTGGAGAGAGCTCCAGAAGCTCTATTTGGAACCTCTGGCTGAAGATAAAGAAAAACAGAAGAAAATCACAAATGACCTAAAGGAACTGAGAAACAAGGTGACTTTTATCTTTTTCATCTGCAATGCCATGTGGCTGGTGGCAACGTTCACTCTTCAGGCCATTGGAACCTCAGTCACTATCAAAATCCCAAAATCCAATCTCAATCTGACTCAGACTAGGGAGTATCTATTTATCGATCCAGTAGGACTGATGTTCCTTTTGGGATTTGCATCCTTACTGCTGATCCAGTTCTTTGCCATGTTCTACCACAGAATTTACACTCTGATCCATTTCGTGGCATTTGCGAACACGGAGTCCAAGACTGAGAAAAGACAATCAGACGATGGCATGCAGATTCCTGACATGCTGGAGATAGAGCTCAAAGACGACAAATACTTTGACACATTTCTGTCTATAGAGAATCCAGCAGCAATCCAGCAACAAGGCCAAGAAACCCCAGTGTGAGGTGTCCCTTAGTGGCAAGCAGTTGCAGCTAAAATAGTAGTAGGAGTCGGATACTGCAGTTTTGCGTTAGATGTTGCACAGTTAGATATAGTGGTATTGAGGGAGAATGTTCCAAATAGTATAGATTATAGAGAGTATTTATTGGATTTGATAGagttaacctttgtttaaccagaaAAAGACCCGTGATGAACCTCTTTTGCGAGGGCAGTGTGAACATACAATACAAGAGCAAAGACGGggacaaaacattaaaaacaattGCAGCGATCAACAACATGTATTATAGCATAACGGAGTATAACAATTGAATGGGAGTTAAATCTCAGGGAAATGTGATATGTGCTATTTCATGTGTGATCAATTGTTGTAGCTTGTAATCTTTGTTTGCTCCTTGTGTGCTTTCCCTTTTTTTAATCAAATGCTTTGTTGTGAATCACTTCCTATTAGTATTTTGGTTAGCAGTTATACTTTTCCCTTTTGAGTGAAGCACTTTATCTGTATATTGCACTAATATATTGAGATTTTTTAGTGGAGTTATGTGTGCTATGTATTTATTATGTAACTGAATAGAATGTATAATTacagtatttttttgttattaaagtaggcaagacagttaagaacaaattcttatttataatttATAAGCCCTCTCTACCGATAACATTGTGCTTTGTTTCATTCTGGTATCTGTATGCTAATCCATGCGTAATACaactatatacatactgtatt
>TU2653501
GATTCTCAGCATGGCCGCCTCCATCCTAGGCCCGGCCACAATCTGCCTAATGATCTCAGgAAGCTTGTCGTTCATACTAGACATCGATCCCAACGTTGCTTTGGTCCTTGCAACAGTGCCCCCTGTGGTGTACCTGTTGCTGTGCTTCAAGCTGAAATCGGACACACAGATCGCCATAGCAGCCGTCATGAGTGTCTTGTACGCTTTCCTCATGATAGGAACCGCTTTGTCCATCATAGGTGCTATGGTTGAGCAGCAAACCATTTGGACTCCTAGCGGCCTGTTTATCATAGGCCTGGTGCTGATGAACATCATCACAGCAGC

Function

NR:

description
chitin synthase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971006.1 False 3063 mRNA 0.46 15 33166851 33175323
TU2653501 True 324 TUCP 0.52 3 33169463 33170117

Neighbor

gene id symbol gene type direction distance location
LOC118946467 LOC106598515 coding upstream 126 33165519 ~ 33166725 (+)
LOC110488341 ke4 coding upstream 49849 33107620 ~ 33117002 (+)
LOC110488340 LOC106569947 coding upstream 84655 33073339 ~ 33082196 (+)
LOC110488339 LOC107726165 coding upstream 103002 33061342 ~ 33063849 (+)
LOC118946511 NA coding upstream 109712 33056299 ~ 33057139 (+)
LOC110488342 LOC106588394 coding downstream 5047 33180370 ~ 33213019 (+)
LOC110487595 LOC106569953 coding downstream 64330 33239653 ~ 33283949 (+)
psmb13a LOC106569958 coding downstream 177907 33353230 ~ 33356613 (+)
psmb8a psmb8b coding downstream 182111 33357434 ~ 33360834 (+)
LOC100136325 LOC106569962 coding downstream 253675 33428998 ~ 33433876 (+)
G2320023 NA non-coding upstream 23682 33142894 ~ 33143169 (+)
G2320022 NA non-coding upstream 23965 33142585 ~ 33142886 (+)
G2320021 NA non-coding upstream 26239 33140182 ~ 33140612 (+)
G2320019 NA non-coding upstream 34092 33132399 ~ 33132759 (+)
G2320018 NA non-coding upstream 34877 33131706 ~ 33131974 (+)
G2320064 NA non-coding downstream 48982 33224305 ~ 33224508 (+)
G2320162 NA non-coding downstream 280168 33455491 ~ 33455772 (+)
G2320163 NA non-coding downstream 280571 33455894 ~ 33456189 (+)
G2320164 NA non-coding downstream 281466 33456789 ~ 33456990 (+)
G2320165 NA non-coding downstream 284437 33459760 ~ 33459991 (+)
G2319921 NA other upstream 223459 32942203 ~ 32943392 (+)
G2318792 NA other upstream 1212338 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 1224937 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 1545714 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1826320 31334757 ~ 31340531 (+)
G2320160 NA other downstream 275836 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1161787 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 1673855 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 1794898 34969069 ~ 34972560 (+)
LOC110487604 LOC106570016 other downstream 2097816 35025996 ~ 35277684 (+)

Expression


Co-expression Network