psmb8a (psmb8b)


Basic Information

Item Value
gene id psmb8a
gene name psmb8b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33357434 ~ 33360834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560568.2
AAATGTGTGATACGTTTTCAGTCAGTTTACTGTATATTGTTGTGAAAAATCACGTCAAATCTTAATAACTATTCACAGTTGTTTATCCGTATGATTAGGGGTGGTTAGGCTATTGTCAAATAATACTCGGAATGAGTACGCATATTATAAGCAACAGTTGGGTTACTTTTTCGATTAGGAATGAAAATTTATATTAAAAACCCTTTCGGTTTCGTTTGGATTCGGAAATATATTTCCTTGACGCGTCAGAGCGAAGTCAAGCTGTATTTTCGCTTTCAAATTTTATTAAGATACAGTACATTCTTATATTTGATTTAATCATTATGGCACTTTTCGACGTAAGTGGTTATAAATCGCACGCGGGACTTCGTGGGCAGATTCTTGGAACAGGAGTAGGGCATCTTGTTGACCGACCGAATCAGGAATTTGCTGTCCCAGTTGGAGTGGATCCTTCAGGGTTCCTGAAGTCATGCAGCCGTGAAGGTGGGGTGTCCATTGATCTGAATCACGGAACAACTACACTGGCTTTCAAATTTCGCCATGGCGTCATTGTGGCTGTGGACTCCAGGGCCTCAGCTGGCAGCTACATTGCGTCGAAGGAGGCTAACAAGGTGATAGAGATCAACCCTTACCTGCTGGGGACCATGTCTGGCAGTGCTGCTGACTGCCAGTACTGGGAGAGACTGCTGGCTAAGGAGTGCAGGCTGTACAAACTGAGGAACAAGCAGAGGATCTCAGTGTCTGCAGCCTCTAAGCTGCTGTGTAACATGATGCTGGGATACAGAGGCATGGGCCTCTCCATGGGCAGCATGATCGTTGGCTGGGACAACAAGGGCCCTGGTTTGTACTACGTGGATGATAACGCCACACGTCTCTCTGGTCGTATGTTCTCTACTGGTTGTGGTAGCAGCTATGCGTACGGAGTGATGGACAGCGGCTACCACGAGGACATGACGGTAGAGGAGGCGTACGAGCTGGGCCGCCGTGGCATCACCCACGCCACGCACAGAGACGCCTACTCTGGAGGAGTGGTCAACCTGTACCACATGCAGGAGGACGGCTGGATAAAGGTGTGTAAGGAGGACGTATCAGAACTGATCCACCGCTATAGGAAGGGCATGTTCTGATCCCAGATCAGTTtctacacccacacagacacactgtgttCTCTATCAACTGATCCCAGCACTGCTCCAAATAAAGACCGTTTTCAAACTGCATCCTCTGGATTGTTTAACCTGAAGGTCTTACATGCAGTCACAACTTGCTGCAACTGTTACCATTCCTATTCAAATGTACAGTATGATAATCTACCAGTTATGTACCAGTCCTATTCAAATGTACAGTATGATAATCTACTAGTTATGTACCAGTCCCAGTCATTGGAAAATGTTTGTAGGATTGTTTAATACAATACTACAAACCTTGATTTTAAATTTCTCTGTAAAGTCTGTTGAGACTTGTGAAATACACTTGACAACTTTGTGCCTTGAAGCGTTTTAGTCAAATGTTTTAGCCTACTAAACAGTCGAATAACATAGCCGACAGTTGGAAGAAGTAAAATTCAGAGTCCTTATCGTTTTGTCGAGCGTATCTGCTTCCAACAAACTGTTTCCTGAAACACAAATACTTGTCCCAAACCAGTCGGATGTGTTTGCCCAGGTGTCTTTTGGTTGGCATAATTCTGTAAATGTCCACCTCAGTATAGGAGTTCACTGTACAAATGAAATTCTACAACCAAAATGTTTGTGATATCAGAGGAAGTTTTAAATGAATGCAATGAATTTGCCATAAAACCTGAAGAAGCC

Function

NR:

description
proteasome subunit beta type-8-like

GO: NA

KEGG:

id description
K02740 PSMB8, LMP7; 20S proteasome subunit beta 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560568.2 True 1808 mRNA 0.44 6 33357434 33360834

Neighbor

gene id symbol gene type direction distance location
psmb13a LOC106569958 coding upstream 821 33353230 ~ 33356613 (+)
LOC110487595 LOC106569953 coding upstream 73485 33239653 ~ 33283949 (+)
LOC110488342 LOC106588394 coding upstream 144415 33180370 ~ 33213019 (+)
LOC110487593 LOC106570137 coding upstream 182111 33166851 ~ 33175323 (+)
LOC118946467 LOC106598515 coding upstream 190709 33165519 ~ 33166725 (+)
LOC100136325 LOC106569962 coding downstream 68164 33428998 ~ 33433876 (+)
LOC110488355 LOC106569963 coding downstream 107780 33468614 ~ 33479472 (+)
LOC110488359 LOC106569967 coding downstream 138046 33498880 ~ 33516670 (+)
LOC110488363 LOC101168223 coding downstream 169401 33530235 ~ 33535712 (+)
LOC110488362 LOC106569970 coding downstream 175711 33536545 ~ 33552244 (+)
G2320064 NA non-coding upstream 132926 33224305 ~ 33224508 (+)
G2320029 NA non-coding upstream 133651 33149820 ~ 33223783 (+)
G2320023 NA non-coding upstream 214265 33142894 ~ 33143169 (+)
G2320022 NA non-coding upstream 214548 33142585 ~ 33142886 (+)
G2320021 NA non-coding upstream 216822 33140182 ~ 33140612 (+)
G2320162 NA non-coding downstream 94657 33455491 ~ 33455772 (+)
G2320163 NA non-coding downstream 95060 33455894 ~ 33456189 (+)
G2320164 NA non-coding downstream 95955 33456789 ~ 33456990 (+)
G2320165 NA non-coding downstream 98926 33459760 ~ 33459991 (+)
G2320178 NA non-coding downstream 126825 33487659 ~ 33487936 (+)
G2319921 NA other upstream 414042 32942203 ~ 32943392 (+)
G2318792 NA other upstream 1402921 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 1415520 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 1736297 31617119 ~ 31621139 (+)
G2320160 NA other downstream 90325 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 976276 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 1488344 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 1609387 34969069 ~ 34972560 (+)
LOC110487604 LOC106570016 other downstream 1912305 35025996 ~ 35277684 (+)

Expression


Co-expression Network