LOC110488364 (LOC106569971)


Basic Information

Item Value
gene id LOC110488364
gene name LOC106569971
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33553175 ~ 33558428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560592.2
GGAATCTCGCGCAAGAAAGCCCGGCTGGCGCGCCAAATTTCAAAGGACTTCCTGGGGAAAAGAACGCGAAAACCTCTGTTTAGCAAAGAACGACGATTAAATTGGACATAAGTCAAAAGTGATCAAAATACAAAAGTATATCCACAGTTTTAAACAATCGGCACCGTTAGCATCATATTTAGGCAGTGGAAGATAATTCAAGTGCACCAGATTCGACCCACGTTTGTGGAGATTGAACTACCTCAAGCTGCCAGTTCTAGCCCCCAGCCTTTTAGTGTCCATTTCTGAACTAGTTAGCTTAGTCAACTGTAACCATTAGCATTTACAACTGATATTTAGAGGACGTTACTCAGCAACTAACCGTGCAGGTTATAGATTGTATACAATATAGGTTTTAACTTTCACTTTTAAAACAAGAGTTTTAATGTTTACTCTGTTCAAATTCATTCAACACCACATACTAAGAACAAAGCCTTTACCAGCATTACAAACGGCTTTTTTATCACATTTACTGACTTAAGTGCTATTTAAGCCATGGATAGCTCTATGTAAGAAAGTAGCTGTTACTGACTGGGGTGGGGATCGGTGAGTCGTGGCCATGCTGTCCGGAGTCCAGCCGTGTTTCCAGCTGCTGAGAATCGGCTCGTCCTCCACAGATTTGGCCCAGGACCTGTACACGTTCCGGCCGGCGCTGACCCACTCAGTGTTTCGGCTGGGCCGTGCGGCAGAGCTGTGTGATGTCACCCTGGACTCGACGTCCGTGTCCCGGATCCATGCCGAGCTGCATgctgagagggaggtggagggggcggCCGAGGGGGGCTGGAAGGTGCAGCTGAAGGACCGGAGCAGCCATGGTACCTGGGTGAATGAGGTCCGTCTGCAGCCCAGTGTCCAATGGGAGCTCTCAGATGGCGACACACTCACCTTCGGCTGCCAATCAGAGCGAGGGAGCCCAGAGTTCTACTTTCTCTTCCAGAAGGTTAGCGTGCGGCCGTTGGACTTTGACGCCATCACCATCCCCAAGGCCGGCACCTTCTCCTCCGACCTGAAGAACCGAATCAGAACGAGCCTGGACCGCAAGGCGGTGGCCAACTTGGATCTCTCCACTTGGTCAATCAACAGGGCGACTGTCATTCTGAATTCCATTGGAAGCCTGAGCAAGATCAATGGGAGTCCTTGGACATTTAAGAGGAGTGACGGCAGTATCACAGACCCAAACTCCACCTCCCCGCCTTTCACATCCTTGGTCccgccctccacccctcctcccttcccgCCCACTACCTCTGTGGTCTCATCCAAGTCACTCCCGGCATCATCCAAGAGCAGGCGCAAGTCAGCCCACACTGTACTTCTGGAGGATGACAGCTCGGACGAGGCCAGGAACCACCGAAGCGTGAAGGACAGCCAGAGAGGGACGAAGAGAAGACGCCTCTACAAGTCTGAGTCTGAGGGTTTCCACGCTTCTTTAGCCAAAACGGACCAGGATGTACGACGCCAGTTCGAACTGAAGCCTGTGCCTAAACCGATTGCAAACGGTCACGCAATCGTTGCTAACGGCAAACTCAACCACGTATCTTTCAACATCAATCAGAGGCGGGAGATCGACCCAAACCATCAGAGGACTGGCCCAAATATGAACGTCTCTGTGTTTCGCCAGCAGAATATTTTTCCGCCGCCATCTTCTGGGAGGGGAAGGCGACGGGCTCACAGCTCCCCAGTGTACTCCCCTATGGTGGTGGGAGGAGAGAGCTACTCGCTGGTGTCCCCGTCCCTTAGGATCTGCAAAGAGGAGAGAGCACGGCCAGGGCAGTTTGCCAGATTTCATGTCACCACTGGcaAGCGGCGGGGCCGACCAAGGAAGCACCCTCCTCCGCggccctcccttccccctccttcctcttcctcctcttcctccacatcctcctcgtcctcctcttcgagctcctcctcgtcctcctcagaAGACGAAGAGGAGGGGGTGGTATCCCAGGGGGTGGAGCCCTGTGCCGCGCCTCGCTGCCGCCTGCCCCAGCAGGACACGGTGCAGTGGGTCCAGTGTGACGACTGCGATGCCTGGTACCACCTGGACTGCCTGCACTGCGACCGCAAGAACCTCCTGCTGGACCCCAACGCAGACTTCCACTGTGGCTGCTGCTGATACAGCGGGAGTGGGTCACAGCCCCTAAACTAGAACACACTTAAATGCCTTAATCATACCACAGGGAATTTGGGGCTTGTTTATGGAGAGAGGAAAAAAGACGATTGTTGTATAATGGGGATTgtatgaatttaaaaaaaaaagtagatgTTGTACAGTGTTTGTGGAGGTTTTTAGCTGCGACTTCAGGCTGTCATGGACAGTGGGGTGGGTCTCATCTACGTGATAGTTAGAGGCGGTCCTAAACTTGACATTTTTCAAAGTGTTCATCCACGTTCGCTCTGTTTGCGCAGCTGTTTGACAAATAGAGTGACAGCTAGGACTCGGGTTAACAGTGGAGACCCTGGGGACTGATATGAACTGTGTTGgaactatttcagccacacgaGCTACTCTCTGGTGTACAGTATAAGTCTGGGAAACAAGTAGATGCACAGTGACAGACAGCAGGTTTATAACTTCATGTGCTAAGTACTTCGATATCGGGTTGTGAATAACCCGCTGTTGATTGGGGCAAATGGAGGTGGTATTGGAGAATTCACCGAATTCGTACCTGCAGTTACACAATATGCATTGCAATACTCTCATCACACACCAAAAATAATCGCGCAAGGATATGCTTAGCTTGGTTCTATCCTGTTGAGTAAAGATGTTTACGCAAGGAGGAGCATGGGTTTTCTGTGTTCCTACCGTCTAGTAGTTGTTTTAATCTTCTCTTAAAGACTTTTGATATGAGAATTCAGATCTATAACACACGGACTTGTTTTTTTCGTCTTCCAATTAACGTAAGCTTTCTGGTGACATTGATTTACGTCTCTTAACAGTGTACCGTATGTATGTCTGTCCATAACACACGTCGATTTAGAGAAACTCCACCCAGAAACTAGTTTGGTATttgtccattgttgacatagtctcAACCATATTTTGCTCGTCAGCAATCCCGTTTTCAAGATATGTCACTTCTAAATGACAGATCATCCCCATATGATGCATTCTGCTTTTTTCCAAGATGAATCATACAGGgaggatttctgtattttgaaagttacatatcttggaatctttattcaactaggtaagtcagttaagaacaaattcttatttacaacgacagcctaccggggaacagtgggtgaactgccttgttcaggtgcagaataacagaccttgtcagcttggagatttgatccagcaacctttcagttactggcccaacactaaccactaggctacctgccgccccttgaTTTCTGGTCAGGAAaacatgtcaacaatggactaattaaACAAATACCAGAAGATTtgtgggtggagttttccttcaTCAAGTTGTAGAGCAGGCATGACCGACACTCTTGAGGAGCTTCCCTTGTGCAGGGTTTTGTTCAAGCCCTATAACTCACCTGATTGTAGTAATCAGCTGCTCCTTAGGCCCTTGATCGGCTGAAACAGGTGAGATATAATagggctggagcaaaagcctgctcACCCATTTCATCTCCAGGAGTAGGGTTTGCTCACTTGGATGTCTCTCCGATTATTGGTATTTGTCTTGAAAGTTAACCAGGGAAGAAATAAAAGGTATTTCAAAAATGTATTGATGGAATATATTGTATTGATATATTTTTCAATCTGTAGTTCGCAAGTCCGTTCTGTTCACCATGATGCTTATTTGTGAATGTATAACATCTATTGGCTATTGAGTTACCAAGTGCCTGGATAAAAACTACTATATTGAAAAGAAACTAGCACAGCGGGGATCTCGACGCAACAGCTTCACAGATTTCATGGAGCATCAAGATCGCCCGTGTGTGCTGAAGCTTCTTTT

Function

NR:

description
transcription factor 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560592.2 True 3995 mRNA 0.48 4 33553175 33558428

Neighbor

gene id symbol gene type direction distance location
LOC110488362 LOC106569970 coding upstream 931 33536545 ~ 33552244 (+)
LOC110488363 LOC101168223 coding upstream 17463 33530235 ~ 33535712 (+)
LOC110488359 LOC106569967 coding upstream 36505 33498880 ~ 33516670 (+)
LOC110488355 LOC106569963 coding upstream 73703 33468614 ~ 33479472 (+)
LOC100136325 LOC106569962 coding upstream 119299 33428998 ~ 33433876 (+)
LOC110488365 LOC106569973 coding downstream 6058 33564486 ~ 33642478 (+)
LOC110488366 LOC106588414 coding downstream 112016 33670444 ~ 33699120 (+)
LOC110488367 LOC106569975 coding downstream 176635 33735063 ~ 33787371 (+)
LOC110488368 LOC106569976 coding downstream 255857 33814285 ~ 33841096 (+)
LOC110488369 LOC106570138 coding downstream 294993 33853421 ~ 33888479 (+)
G2320178 NA non-coding upstream 65239 33487659 ~ 33487936 (+)
G2320165 NA non-coding upstream 93184 33459760 ~ 33459991 (+)
G2320164 NA non-coding upstream 96185 33456789 ~ 33456990 (+)
G2320163 NA non-coding upstream 96986 33455894 ~ 33456189 (+)
G2320260 NA non-coding downstream 79139 33637567 ~ 33638583 (+)
G2320373 NA non-coding downstream 376145 33934573 ~ 33935050 (+)
G2320396 NA non-coding downstream 422066 33980494 ~ 33980770 (+)
G2320411 NA non-coding downstream 440692 33999120 ~ 33999664 (+)
G2320160 NA other upstream 101555 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 383058 33166851 ~ 33175323 (+)
G2319921 NA other upstream 609783 32942203 ~ 32943392 (+)
G2318792 NA other upstream 1598662 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 1611261 31934883 ~ 31988737 (+)
G2321378 LOC106569991 other downstream 778682 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 1290750 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 1411793 34969069 ~ 34972560 (+)
LOC110487604 LOC106570016 other downstream 1714711 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 1882606 35441034 ~ 35521453 (+)

Expression


Co-expression Network