LOC110488365 (LOC106569973)


Basic Information

Item Value
gene id LOC110488365
gene name LOC106569973
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33564486 ~ 33642478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970682.1
TTTTGTGACATCACAATCAATCTCCCAGAATGCGTGGGAATGCTGAGTGGAACACTATTGTGACTTTCTTCCCGTTCAGCAGTAACAAACACCGTAGACCTCTACCTGTACGCGATACGTCCGCACCACATCGGGAGGGGTTTTGAATGCTGTTGTGCGACTGTCAAGAGGCACTGTAATTTGAAATCGAGGAAATAAGACGTCGGACTGAAGAGCAAACGAATGGCGAGAGAATACGCTAAACATTGCCCCGCATCACCAATGAAAAACAGTTTGTTGGTGACAGCAGCGATCCTTCTGATTATTCAAGCTGCTTCGTGTCAGCGGGTGAGGGTGGAGACGGAGGTGGAGGCGTACCCCACCGAGTCGGTCGACCTCCGCTGTCAGTTTGTCGACGGAGGAAACACCAAGCTCACACAGGTGTCGTGGATATGGGAGCCCACGGAAGGCCAGCGGGACAACATTGCCGTCTTTCACCCCACATACGGCGAGAGCTTCCCCGAATCTCCCTTCACTGGGCGTGTCCGCTTCATCAAAGGCACCTTGACAAGCCCCTCCATTACCATTACCAGCCTGAAGATGGCCGACGCCGGGCGGTACACCTGCGAGTACGCCACCTACCCCAGCGGCAATGAGCAAGGCACCACCAATCTGGTCATGCTTGctaaacCCAAGAATTCGGCATCTCCCGTTGTCGTCCAAGCCAGCACCAGCGGTGAACCAGTGGTCGTGGCCCAGTGCGAGGCTGCCGACAGCAAGCCAGCGGCCACCATCAAGTGGATGGGAGCGGTCGGTGGCACTGAAAACACCACCTCCGTAAAAGGGCCGGACGGCACGGTGACGGTGAGGAGCAAGTACCTCATAGTGCCCACGCCAGAGGACAACGGCAAGGAGGTCACCTGCATAATCAGCCAGCGCACCCAGGACAAGCCCCAGACCTTCCCCATGAAGTTGGCCGTCGAGTATCCCCCGACTGTGTCCATAGTGGGCTATGATAACAACTGGTACGTCGGCCGAACCGACGCTGTCCTGACCTGCCAGGCCACTGGCAACCCTGCCCCCACCACCGTCACTTGGACAGTcATGTCAGGTCCTATGCCTGACACGGTGCAGATCAACGCCAACAAGCTGATCGTGCGGAAGGTGGACGAGGCTGTGAACACCACCTTCGTCTGCGAGGTGAAGAACCGGCTGGGAGTGAGCAAGCACCAGGTCACCACAGCGGTCATCGAGGCCATAGTGGACCCGTCCAACGCGGGCGTGGTGGCGGGGGCTATCATCGGCAGCCTGCTGGCCCTTCTGCTGGTCAGCGCGCTGATTGCCGTCCTGGTGACCCGCAGTCGCCGGCAACGGCGCGGCTACCCCGGCAACGGAGAGCCAGGGGCCTACGGGAACAAAGCCCGCCTCTTCGGCGGAGCTGGCAACAAGAATGGAGGCACTGGGCTCAACATCAATGGGCCCATCTATACGTACCGCGAGAGTGACCCCGGAGCACTGGCCAAGGTTAACGACTTCCACAGCCCGCCAGGCTCCAACCCCACCGCCCACGACATCCTGCTGAGCAGCGAAATGGATGAGGCGGAGCGCAGGAAGTTCGACGCACTCGACGGCAgcctggaggaggaagaggagcgcTACGACAGCTTCAGCGTGGGCATGGCGCCAGCCTATCACATCCACCGGCGCGACGACGAGATGGGAGGGGTCAGCATTTACCTGGATGACGACATGGAGTCACAGCGGGACGGGTCGGTCATCTCCCGGACTGCCATCTACGTCTAGAGAGGGACGGTCAACCAACAGGGTCCAGGAGGGAGAgctgaggacagggaggagagttCACCACCAACCTCCAACCACCTGTCTGGAATGATCCCATCAACCACCCTTCCCCTGCTTACTCTAGAGACATGCTTCGCTTATGATTATTTTCTATTAAAAGAAACCACCACAGAAACAAAACAAGGAGTCGAAACTGTTCTGTAACTGATGGACAAGCAGTGATGACTTGAGGGCGCTGCTGAATGACTAGACGTCttgaagtcagtcagtcagtctaccCCAAAAATCAAACGCTGTATCTCCTCTTCAATGCTGCTTACCACTCCATTTCAGCTTAGCAAGTGAAACGTGACCGGGTGACcgcatttagtagccaactaatcCACGGAACTGCGAACACCGTAAAGACTTTTTCTTGGTAAGGAAACGTACCGTTCAATGTCACCTTCATGGGAAAACTTTAGACGCATTCGTAGATGGTCACACTAGTTCTATAACCACTGCTACAGCTTCAAGATGTTCTCCGGTGAACCGCGGTGTGGAGGGCAAGGAACAAAGCTGTGTCTTGCTTAATGTGCATCATCACAGGCATTCATACACAGCGTTATGTAATGGTCTTTGTATTGTCAAGATGTTTGGGCCTTAAGGGCCTCGTTGAAGCACGTTTGGTTTTAATGACTATTAGGCAGAGGTTCGTCTCACCAACTTAGTTTCCAACTTTATTTTCAATGCACTTTTCCTTCTTTCTAATGGCTTTGTGATTCTTTTCTTTTACATTTGGGAGACCAGCGACATGGTAGACAAAGCTGGGGGTGGGGTTTGAACGAGAGAAGTGGAGCGACCAgatccgtaaaaaaaaaaaattccaccTGAATGTTGGCTCTGTTCATGTTGGTGGAATTTCACCGCTAAGCAGGGGTCAGCGGGTCAGCTGGCACCGTCCGAGGTGTGCTAGCCTACCATGCTTAGGGTCCAAAACCAGCTTGTCTAGTTTGCCTAGGGACAGATAACAGACCCACTGACAGATGGACAGGCACACCCATCTCTAACTGGGCCTCCTGCTCTGCCTGTCAGTTTGACCAATTAGACGGGAGCACCCTCCATTTCCCCGGCAAGTCGATCAATGCGCCGTTTTTTTAATGGCAACGAGATATTTCGCTGCCGACGCTCGAGGATCAGAGGCAGAGGCGGAATATTTCCCTCTCTGTTTTTACCAGAACAAGCTGTTCCTTCCCCGCATGTTTAATTCAGGAGTGGAAGAAGCATAAAAGTGTTGCGCGTTACCTTGTgcggagggatagagagagaggctggtaTTGAGTACTTGTGCGATTTAATCCAGTTAAACCAAGCTGCACATAAGGCTGAAATTACAATATTTTGCTCCCGAATACAGTAGGAATTATGAGGTGGTATGAGGTAGACTGTCTATGATCAATTATCTACTTAGTCTTAGAAatattctctcttttttttttagcaGGGCGGAATACTTAGTAGAGTATTTATATTTGTCATTTTTTTGCTGCGTCTCTGTGTAATCTCTTCTGGCCTTCTAAGGGGGCAGTAACACATTAAATATGCCTGTGACTGTGTGTGGGGGTATTTCTGACCATGTGCAAGGCCCATTAGTTCTAAGCCTGACCGGCATATGTGTTTTCGAGTTCTGAGTGGACTGAATTTGATTCTCTGCCAGACCTGGAACGAGGGTAAGGAGCTAACCCCACCCGCAGTATGTTCCACTGTCGGATTAGCGGCGTACACGTTAAAGCAGCGGCCGCGCGTGGGTATGCTGACGAGTGTGTCAATTGTGCAAGGGTGTGTGTAGCGTGATTGAACAGATTTGTGTCGGCGAGTATAttttgagttgtgtgtgtgtgtatatcccaCACGCTGATTCACCGCGTAATAGCTCAATATTATGCAGGAGTTGTTTTTGCATAATTTCATACATATGGATTGCTAAGCCTATCCTGATTTTATCTCGGAGTCATTCATCACTCATTTCATGCACAGTAACCTCACTGATGAAGGGGTTGGGGGACGGTGATAGGAAACTGCTTAGCACGAGGACCCGCATGGACATGAATATTTCACTGGCGGAGTTGGAGTGACTCAAAGGGCCTTTGGAGTGGTCTCCTGTGCCACCCCTTGACAGATGAAAACTTGATTGGGTATTGGTATCCGGGCCGCTGCTCTGAAAATATTGTGTTCGACGACTCCTCCTTTGCCTTTTTTTTATCACAGATTCATATCACATAATCAGATCCTCACCACTGTGTCCAAATTAACGGTTTGTTTTCCTGATGATGTTTTGTGCGAATGGATATAAGCATTTTAACAGTCTTATGTGAAGTGTTTGGTTGTgtatttgttgatgtaaaaaaatcaatttaatgAAGTAAGTGTGTATTTATCTTCGAGGCTTCCGATAAGAAATGTTATTGGTCCATTAACACAGACTACTATTATGGGAATTGGTTGCAAAATAACCAATGAAAACAAATGACCTTACATGCATTGACACACATGTAATTACAGTATCTTGTAGCCTACTGGTACATAGAGGTACATTATATTATCGAGGGCCTTGAACTCTAAGCTGCTCTCACCATCTTCTccacacaaacactctctctctctctctctttcttccacaGATAAACTCACATGAGAGCATATAATCACCCTCTCTCAAGATCTGTTTCACCCATagaatgcgcacacacacacacacaaatatcttTCCCTGACCTGACACACACCTTGAGTGCAATGCCTCCCATTAGCAGGGGCAAGATTGTTCCTCGTTGGGCTCCATCATCATTCTCCATCTTGCTAttaagatgaacagagagagagaacatctctCTCTACAGAGGCTTAAAACCTTTAATTCCCCATTTCCCTGTTTTTAAGAAGTAAACCCAGCACCAATTTCACCAATTTCACATGGAATAAAAAGCTACGTTTCTGGGATGAAATTACTCTCCCTGTCTAAGGGCAGTGGTGGTGGTCATTTTAAAAAGCCTAATGGGTCACGACAGCCTACAATTCACGCTCGACTCTAATCTCAAGACAACCAAACAAAGCCTTAAATTCACAATTCCACCACATGCAGTATTCCCCGTGTCCCTCGTGTACATAGCATAAATAAATCGTACATAACGTGCAACAAGCATGACTAATTGATGTGGTCATGTTAGCCCAGTTGCTAGCATAATAAGATATTCCATTTTTTCGGCTAAATTCTACAGTGGggtttttttttcattttcttttttttttacttgagcACAATATTGACAGGATTATGACCTGGAGAATATGACTAATATTAAAATGCTCCTATATTCCCAGATGTTTGTCTCTCACTACAAGCTGCTAGTATAACGATGTTCTCTGTATCGCCATCTGACATTGTGGGTGTTTCGTTCCAGTTTGTCCTGtcacatttatttttgtattctGGTGTTATTAAAGTATGATGGATTTCTAAATA
>XM_021560594.2
TTGTGACATCACAATCAATCTCCCAGAATGCGTGGGAATGCTGAGTGGAACACTATTGTGACTTTCTTCCCGTTCAGCAGTAACAAACACCGTAGACCTCTACCTGTACGCGATACGTCCGCACCACATCGGGAGGGGTTTTGAATGCTGTTGTGCGACTGTCAAGAGGCACTGTAATTTGAAATCGAGGAAATAAGACGTCGGACTGAAGAGCAAACGGTCCGTACCCGTAACTTACCGACTCCGGTCTGTTTTGCGGTTTATTTCTATTAGATTTCCCCCCTGAGAAATCAGTCAAGGAATATTCATTGCGTTCTGGTGTGGTGGTGGAGATTTCATGTCCACCCCGTCTTTTTAGAATGGCGAGAGAATACGCTAAACATTGCCCCGCATCACCAATGAAAAACAGTTTGTTGGTGACAGCAGCGATCCTTCTGATTATTCAAGCTGCTTCGTGTCAGCGGGTGAGGGTGGAGACGGAGGTGGAGGCGTACCCCACCGAGTCGGTCGACCTCCGCTGTCAGTTTGTCGACGGAGGAAACACCAAGCTCACACAGGTGTCGTGGATATGGGAGCCCACGGAAGGCCAGCGGGACAACATTGCCGTCTTTCACCCCACATACGGCGAGAGCTTCCCCGAATCTCCCTTCACTGGGCGTGTCCGCTTCATCAAAGGCACCTTGACAAGCCCCTCCATTACCATTACCAGCCTGAAGATGGCCGACGCCGGGCGGTACACCTGCGAGTACGCCACCTACCCCAGCGGCAATGAGCAAGGCACCACCAATCTGGTCATGCTTGctaaacCCAAGAATTCGGCATCTCCCGTTGTCGTCCAAGCCAGCACCAGCGGTGAACCAGTGGTCGTGGCCCAGTGCGAGGCTGCCGACAGCAAGCCAGCGGCCACCATCAAGTGGATGGGAGCGGTCGGTGGCACTGAAAACACCACCTCCGTAAAAGGGCCGGACGGCACGGTGACGGTGAGGAGCAAGTACCTCATAGTGCCCACGCCAGAGGACAACGGCAAGGAGGTCACCTGCATAATCAGCCAGCGCACCCAGGACAAGCCCCAGACCTTCCCCATGAAGTTGGCCGTCGAGTATCCCCCGACTGTGTCCATAGTGGGCTATGATAACAACTGGTACGTCGGCCGAACCGACGCTGTCCTGACCTGCCAGGCCACTGGCAACCCTGCCCCCACCACCGTCACTTGGACAGTcATGTCAGGTCCTATGCCTGACACGGTGCAGATCAACGCCAACAAGCTGATCGTGCGGAAGGTGGACGAGGCTGTGAACACCACCTTCGTCTGCGAGGTGAAGAACCGGCTGGGAGTGAGCAAGCACCAGGTCACCACAGCGGTCATCGAGCAGCGTAAGATTACAGCAGGGCCGTCAACGGCTGGCATCATCGGAGGCATCATTGGTGTGGTCCTCTTCTTGCTGGCGATCGCCTTCGCTGTCATCATTCTGGTCCGCAAACGCAAGCAGAACGCCATGAATGGGGATGGTCCTCCCAAGCACAAGCCCCCTCCCCCTGTGAAGGCCGGCAGTTCCACTGAAATGCTGAACAAGCCTGTCACTGACTCAGTGCTGACGGAGTTGACGGAGACCCAGCCTTTCAGTAACGTCTACTACGAGACCAGCGGAGAGCCTGTCACGGATCTGGATGCGTGTGACGATGACGATGATAACACCGTTGGCGGTGGGGCTGCTAATGGCGGCGGCCCTGCTGTCCTGGAGGACTCGATACAGTATGCTGATGTCGACGACACGCTAAATGACGAAGCCCTGCCGCCGTACTCTGACGCGGACGATCACCATGTCGACGAGCCGCCGTCGGCCACTGTGGCCCGCGGAGAAAGCTTTGTGTCGGCAGCCATGTATGTTTAGCAGGTGACGTTTAGGTctccataatgacacaacaacaacaccgtGCCTCTACTCGGTTACATTGAACAGCACAGAGTCCGAGCAAGGCTCTGGAAAGATCGGCACAACTCCAGCCTCCCGATGTGGTCAAATCCTAAATGCAGTGTTTCCTACTGTTGTGATTCGGGCAAGGTAATATCACTGGAAACATCATTCAAAAAATCACCAGAAAATATCACCCGAAACTGGTTGTTTGAAAGTTGCAATGTTACACCGTCCAGTAAGCATCCTCAGACCAAAATGCCATTTTATGGCAGTATGAACAAAATGAGGTTGTCACTGTTTTATAACATTGCAACATGACTCACGTTTTGGGTTCAGTCTAAATTGCAAGAGCTGGTAATACTGCATTATTAGGGTAATGAAATGTGACATCTTGGTTTACAGCAAAGCACACAATGCACACACAATTATCAATGCGCTCGTAATTCCCCCCCCACAGGAAAGATTACTGCTTACATTTAAGTCAAATTAAGTTCAAATTATAAGGATTGTATTTTCAGAGTGTCAAAATACACGGCCTGTATTGGAGAATACTGCCATTAGTACCATTTTATGTAGATGAAGTGGTTAATATGCTCTCTAATATATGCTGTATATTTTACACATagcaaaatatgtattttaatattttatattttagtctTATTCTAAAGCCTTTTATGTACTGAAACACAAATGTGCAAAACCTCATCGATGAACAATTATGTGAGACCGTGTCATGTTGGTCAACGATGTCAAGGTGAACCAAATTATCAATGaacactgtaaataatattatatTGATGCTTAATATATTGCCGGTTAAATGTGTGCACAAAAAATAACTAGTGTAGTTGGTTCCAGAGCCTCTATGTATAGGGGTGTCAGTTTCCGTGTgaaattgaaagaaaaaaaaactacattttaCTTTAACGGGTATTGAAGTTGTCAGTCAATGAATATAAAAAACGGTTTTGTGGATTTTAGTCCTTATAACTCTGCATGGCATGATCGTGGCTCGTTTCAAAACAGTTGGCTCACTTTTCCCAAGGCTACTTGCAGACACCAGGCTTTATACTTTTTCAATGTTGTCGATGTCTTTGCAGTCCTCCATTGTATCGTCTACTTCAGGCACAACACATCGATGTAGAGCAGCGGGGTGGTTTAGGCCGTACAGAAGGCGCACAGCACGACTTGAGATATCTTTTGGCTGATACATAAGTCAGTCAGCATACGACTACGTTCTTTCCACAGAGTGCTTACTGCAGGGTGCAATAAACAGAAAGTTGAGTCGAACTCTTGCTGAGTAATGGGAACAAATCATTGGTTCTGCGTGTTCCAAAGAGCTTGAGTCGCAAAATTCCACGAAGGCGTTGATCTGTCAGTGTCACCTCGACAGACACCGAGAGAAGCAAGCCTGTACTAAGTACATTAACTTGTTAGATAAAAAGACACAAAGAAAAAGACAGAAACATGAACAAAAAGCACATGTACTAATGTAGATATGTATGTAAATAAATAGATGCTATAGACACTAATGATTGATAGACAGATATAGAAAAATAGATGGCTAAACGTAGACGGACGGggtagacagacagatatacgGACACATGGAGAAATTGATCACAGTAACTGCCTACCCCACTGTTCTATACTCCATCACAGTCAGTGCATTACTTAAATATTATTGTTTTTTTTGATGTGACAATCACTTTGAAAGCAACTGTCATTGGCTTTTGGTGGTGATTTGGTCTCTATGGTTTCTTTTGAAGGGAATGTCTGCATGCTGCATGGAACTATGGGTAGCTCAACTTCTTCTCTGTGCAAAAAGAGTCACGCTGCCATTTTGAAAACATATGGCTGTGGGCGGCGGGCTCGCATAAAGTGCTGCAGTATCAGACAATCACATCTGTATTTTATAGCCCTTACGCAGGTCAGAGTTCAAAGGGAAATTAATTGTTCATTGTTTGGTTTTATAAACTGTGATtccatttatttcattttttttgtgtattttatgTATTTCATATTGTCATCAAATATATTATACTGTTTTGTGTATTGCCTATAAAGAAGAAGACTCAAAATTGAAGATGTGTTGATATATTGAGCTTAAAAAAGACAATCATTGGGACCCCTGGGTTTGTTATTATCAAAGACCAATGAGTCAGCAGTCTGTTTAGTTTAGTTCTGTTGTTTCATGCTCAAGGCATCTGCTAACTACTTCTCGCTGCAGCAGgagatgctgtgtgtgtttgccaaTAAATTAGCCTCCTCCCCAATAGGTTTGATGCCAAAAATACAAACCGTGAAGGTTAGCGATAACACTCATCTGAATCCAGTCTTTTTCCTTCTCTGCTTGTTCGGTTATCTCACATTCGTTGTTGCTTTTTTTTCATCACCAAGCCAGACGTGCCTTCGTTACTTTATTTTTAGCTTGTTCATTTACACATTTGTTCCTCTTAGAAAATAAAGACGAGATGAAAAAGAAACATGGGGTAACCTCTGATTGTGGAAAGCCAAACACTTGAtattgtgttttatttatttttcttctcttTGCTTTCTTTCCCTTTaactgatttttttttcttctgatgcTTTTTGGGAAACGTGTTATATGTTTTACGGATCATTGTCTTGTTCAATAAAATGTAAACTAAAGGC

Function

NR:

description
poliovirus receptor-like isoform X2

GO: NA

KEGG:

id description
K06539 PVR, NECL5, CD155; poliovirus receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970682.1 False 5284 mRNA 0.49 8 33564486 33601775
XM_021560594.2 True 4583 mRNA 0.46 10 33564488 33642478

Neighbor

gene id symbol gene type direction distance location
LOC110488364 LOC106569971 coding upstream 6058 33553175 ~ 33558428 (+)
LOC110488362 LOC106569970 coding upstream 12242 33536545 ~ 33552244 (+)
LOC110488363 LOC101168223 coding upstream 28774 33530235 ~ 33535712 (+)
LOC110488359 LOC106569967 coding upstream 47816 33498880 ~ 33516670 (+)
LOC110488355 LOC106569963 coding upstream 85014 33468614 ~ 33479472 (+)
LOC110488366 LOC106588414 coding downstream 27966 33670444 ~ 33699120 (+)
LOC110488367 LOC106569975 coding downstream 92585 33735063 ~ 33787371 (+)
LOC110488368 LOC106569976 coding downstream 171807 33814285 ~ 33841096 (+)
LOC110488369 LOC106570138 coding downstream 210943 33853421 ~ 33888479 (+)
LOC110488370 LOC106569978 coding downstream 247069 33889547 ~ 33911800 (+)
G2320178 NA non-coding upstream 76550 33487659 ~ 33487936 (+)
G2320165 NA non-coding upstream 104495 33459760 ~ 33459991 (+)
G2320164 NA non-coding upstream 107496 33456789 ~ 33456990 (+)
G2320163 NA non-coding upstream 108297 33455894 ~ 33456189 (+)
G2320373 NA non-coding downstream 292095 33934573 ~ 33935050 (+)
G2320396 NA non-coding downstream 338016 33980494 ~ 33980770 (+)
G2320411 NA non-coding downstream 356642 33999120 ~ 33999664 (+)
G2320412 NA non-coding downstream 358008 34000486 ~ 34000723 (+)
G2320160 NA other upstream 112866 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 394369 33166851 ~ 33175323 (+)
G2319921 NA other upstream 621094 32942203 ~ 32943392 (+)
G2318792 NA other upstream 1609973 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 1622572 31934883 ~ 31988737 (+)
G2321378 LOC106569991 other downstream 694632 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 1206700 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 1327743 34969069 ~ 34972560 (+)
LOC110487604 LOC106570016 other downstream 1630661 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 1798556 35441034 ~ 35521453 (+)

Expression


Co-expression Network