LOC110489333


Basic Information

Item Value
gene id LOC110489333
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34254615 ~ 34255550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468553.2
CATTCATGCAGCACTTTGAGAGCAAGCATCCCAAATCCCCAATGCCCCCAGAGCTGGATGATGTTGAGGCTTAAAAGACCAACACACACAATGGACCTACAGCTGGaCACACGATGACCACGATTAGAGCGCTGCAACTGGAACTTAATGGCGTCAAGAGACAAAATACTGAGACCCCTGGACATGGGTGGGGGATATTTGTGACAATGACCTAAAAAAGGGGGGCAGAAGCACACCAGCACCCCATCTTATATGTCCAACCATCCCTGAACTTCAGACTTTGAAGCACCCATCTTAATTATATGAGCCCACTCTACCTACATCCCTTTTCCCCATGGTGCTTCCTTCATTAATACCTGATTCAGTAACATCTAGACTGTTACACGTCTAAAAGTATCAGGGTGTTACTGtttttgcaactttttctcaGTTGTGTACCGCTGTCTTCCTTTAACCCACAACTCTTTTCTATACCTCCTCCCATACACTCTTGTGCAAATCATTTCTGCTTTCTTTGAGAATGGTGTCATAGTGGAAAGGATTTGTTATTTGCCTAAGACTGAGTCTTGTTCTGCCTGTAAAAGGCCCTGGTTGAAACCGTGCCAAAATCACTGTGGATATTTCCAAGAAATGTAGCAATATATATGAAATCATTCCTCTGCCTATTTGATCCATTCTGAAGGAAAGCAGTGAATAtgttttgtgtgtgagagagaatatgTATGCCTTGTAAATCTAGCAGAAAATGTGTTGCTTCCAAATGCAAGTTAAACGCCATTCCGTCTATACTGATACCAGACAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468553.2 True 804 mRNA 0.43 2 34254615 34255550

Neighbor

gene id symbol gene type direction distance location
LOC110488376 enog coding downstream 81955 34148410 ~ 34172660 (-)
LOC118946458 NA coding downstream 315222 33927655 ~ 33939393 (-)
LOC110488361 LOC106569969 coding downstream 725364 33517551 ~ 33529251 (-)
LOC110488358 LOC106569966 coding downstream 759708 33489584 ~ 33494907 (-)
LOC110488357 LOC106569964 coding downstream 766149 33479769 ~ 33488466 (-)
LOC110512058 LOC106570022 coding upstream 1914 34257464 ~ 34262009 (-)
LOC110489327 LOC106570163 coding upstream 38638 34294188 ~ 34302804 (-)
LOC110489274 LOC106569990 coding upstream 48326 34303876 ~ 34320380 (-)
LOC110487600 LOC106588432 coding upstream 67095 34322645 ~ 34324470 (-)
LOC110489300 LOC106569991 coding upstream 81558 34337108 ~ 34344815 (-)
G2322193 NA non-coding downstream 3639 34250758 ~ 34250976 (-)
G2322180 NA non-coding downstream 21231 34233083 ~ 34233384 (-)
G2321186 NA non-coding downstream 172286 34080499 ~ 34082329 (-)
G2321181 NA non-coding downstream 244067 34010349 ~ 34010548 (-)
G2321180 NA non-coding downstream 244846 34009491 ~ 34009769 (-)
LOC110489314 LOC106569992 non-coding upstream 97286 34352791 ~ 34358527 (-)
G2322236 NA non-coding upstream 109800 34365350 ~ 34365651 (-)
G2322242 NA non-coding upstream 116021 34371571 ~ 34371786 (-)
G2322361 NA non-coding upstream 339971 34595521 ~ 34602314 (-)
G2322392 NA non-coding upstream 384061 34639611 ~ 34641015 (-)
LOC110488353 NA other downstream 834519 33413400 ~ 33425462 (-)
G2320761 NA other downstream 842113 33410499 ~ 33412502 (-)
G2320755 onmy-uea other downstream 859523 33363312 ~ 33395092 (-)
G2320623 NA other downstream 1304677 32917502 ~ 32949938 (-)
G2322234 NA other upstream 105533 34361083 ~ 34361388 (-)
LOC110489328 LOC105025867 other upstream 243476 34499026 ~ 34506457 (-)
LOC110487602 LOC106570003 other upstream 410269 34662296 ~ 34715706 (-)
G2322701 LOC106588461 other upstream 929334 35184884 ~ 35192129 (-)
LOC110489319 LOC106570022 other upstream 1097238 35352788 ~ 35356932 (-)

Expression


Co-expression Network