LOC110489266 (LOC106569989)


Basic Information

Item Value
gene id LOC110489266
gene name LOC106569989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34273307 ~ 34286246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561940.2
TGTATTCTTCTCTCTATGTGGAGTAAAAttgatctagagtttttttccgcTTATGATAAAATTTAACTCAGTGTGCAGACATTGATGCCATCTTCTGGACTGTTTTACTGATACATTTTAATCAAACGTACTTCGGCAAGTTAGTTCGTATTACTTTCTATTTATAACATATTTGGCAATATTCAGATTCACAGCACGACTGCAAAGCAGCCCATCTGGGAACGACCATATTTTCTTGTAGATGACGTCATGACGTCACGTCGAAGTAGCCAGCCAAAGAGGGAGTAGTCCACCACTTTGTTTTGTCGACCAAAGCTTTTGGACTTAGCTACTAACACTAATATTAACCTTGTATTATCTAGTTTACTAGTTGCTGTAGACTACTATCAACAAACTAGATCGACAATGTCATTGGCAGACGATGTCGGATGGACATGGTCCGCGGATGAGACAAAGGCGCTGATCTCGGTATGGTCAGACGAGCAGATTCTTCTGAAGATGGAGCAAACGTACAGAAACAAACATGTTTACAGCGAAATTTCGGAGCGGCTAAAAGACCTTGGTGTCAAACGGACGTGGAAGCAGTGCCAAAACAAGATTAAGGCCTTGAAGTGGAGATACAGAGAAACACTGAGAAACCCAAGCAGTAGCCGACCGTGTCCGTTCTTTTCTGAACTGCACGAATTTCTCGCCGCCATGCCTGACATGCCTGAGTCCAAGGAAACTGACGAGGAGGAAGATAATGgtcttcctcttcctctgtcgtCTCTGCGCCTTTTGGTTCCTCCACTTCGGCTGGTGTCAGCAGCTCTATGGCAAGTTGTTCAGCGGAGAGACACAATGGACTACGGGTTGGTGGAGGAGTTTGCCACCACTGTGTTGGAGATGATCCCTGATCTGATGAGTTACAGAGAGAAAGTCCAACTCATCATGGGGCTGCGAGCgcagCTGGTTCTGGAGTTGTGTCGCTCTGATTGTTCAGCCGACCCGGAGACCATCCAGCCACACCTGAGCAGGATGAGGACCTGCATCATCACTCATAGAGAAAAGGAGATAGATACAGAGGTGGAGGCATCGGAATCAAACTTCTTGGAACTCGTCCAAACTCTTCTAGATGACCCAATTGAGAGGGAACACTTTTTCCAGGATGTTTTTCCAGAAGAATTTGGGTCCAGTTATGACGCAGCACTGCAGACTCTGATGTGGGAGTTCCTCATCAGGCTGGAGAAGTTGCTTCCAACGCCAACCTTTCAACAGACTGTATCATGGCTCAGACCTGCCCCCTCTGTGCTGAAGGAGTGTGCACATTCTGTGACTCAACCTCAGCCTTTGAAGACTCTTCTCCAGCACAACAGATGCCATGGCCATTTGTTCACTAATGCTCCGTCATCTGGTGCCGATGATCGTATCCTCTCTTCACTGTCTCACTCGCTCTCAGAGAGGATAGAAATGGACATTGATGAAGCACGCTCGCAGAGCCAGTCTTTATCCACGTGTGCATCCAGAAAGGAAAGGGACACTTTGATAGAGCACGATAATGTAGAGAAGGAGCTAGGGATGAGCTTGGACACGGTTAAGAAGGCAGTGGAAATGGTGGATGGAAGAACAGAGGAATGGGGAGAGAACGACTATGAGGAGAGACTGCGACATGACTTGGCTTATGATGTTTTAAAGGTAGAGATTGTAGACGGAGAAGACATGTCCTCAACATCATCGATGACCGCAGACGACGTTGGATGGACCTGCTGGACACCTGAGGAGACAAAGTCACTTATCTCTATATGGTCGGACGAACAGATTCTTCATAAGATGGAGCAAAGCtatagaaaaaaacatgtttacagtGAAATTTCGGAGTGTCTAAAGGAGCTTGGTATCAAAAAGACAACCAAGCAGTGCCACAATAAGATAAAAGCCTTGAAGTGGCGCTACAGAGAAACACTGAGGAACCCAAGTAGCCGACCGTGTCCGTTCTTTTCTAAACTGCACAATTTTCTTGCCGCGGTGCCTGATATGCCGGAGTCCAAGGAAACTGGCAAGGTTTCAGATGGAGGAGTCATGTCTTTGGATCGGGATAAAGGGCCATCTGTGGCTGTCGAGTTGGCGCCTCAACGTGAGAAAATGGTTTCCAGAAAAGTGAAATGCAAGACACTCCCCGGAGAGCAAGCCAACGAGAAAAAAGAGGATGAAACATTTTGCATCCCTCAAAGTGACAGCAAGATGAAAAGCCCCCCCCAAAAACATTGTCGCAAACAGATGGTTGAAGACATGTCTTCGACAACCTCGGCAGACAATGACACACGGACCTGGACCCTGGAGGGGACGAAAGCACTGATCTCCGTGTGGTCAAACAAACAGGTTCTTCAGATGATGGAGCAAAGTTACCGGAAAAAACATGCGTACAGTGAAGTTTCCGAGCGGCTAAAGGTCATTGGCATCAAAAGGACGTGGAAGCAGTGCCAATCAAAGATGAAGCACATGAAGCACAGCTACAGACAAGCACTGAGGAACCCAAGCAGTAGTGGCCGAGCGACCTGTCCGTTCTTTTCTGAACTGCACACATTTCTCGCCAACATGCCTGATATGCCTGATTCCAAGGGAACTGGCAAGGTTTCAGATGGCGAAGTCCTATCTTCAGATCAGGATGAAGGGCCTTCTGTGGAGTTGGAGCATCTACATGAGAAAGGGGCTTCTAGAAAAGTGAAAGTCAAGGCACTCCCCGGAGAGCAAACCGAAGAGAGAAATGGGGATGAAAGTGATGGCAGAATGAATATTGGAAGGAAACAACAGGTGGTTGAAGACGTGCCTGATTTAGAACTTCAGCCCGTAGTGCTGCTGACCCAACTTGATGACAACAGTCTCATGACAGCCGGTGCTCCAGGTCCTGTCTCCCATACCACAGAGCAGTCTCCTAAAAGAAGCAAGCGTGCCAAAATTTGCTCCttatgtgggaagagttttgttgaAGCGAAGGATTTGACAACACACATGCGAACTCACACCGAGCAGAGCCCTCACCAGTGCACCCAGTGTGGGGAAGGCTTTGACCACCAGGACGACTTCCAAAAACATCAGCAGAATGAGTGTGAGGAGATGACGAAACGACAGGAGGTCAATGAGCACCAGCATGGAAAGAATGACAGGATATCGGGACAGTCCAGTAATGCAAGTAGTGATCCCAAAACGTGCCACCTATGCCATGAGACTTTTGAATTTCAATATATGTTGAGAAGCCATCTTATTATATTTCACAAAGGCAAAAGACTTTTTAAGTGTCCTCTTTGTCTGAAGGGTTTTGCCTTTCTCCGTGATTTGAAGAAACACCAGAGTAACAAAAGAGGTTGTCCTACAAGTGACTCCGTCAAAAAAAGGAAGGAGCTGAGATCAAAAAGCCCTCCTGCTCGCATCATTCCAGAACTTTCCTCAAACGCAAATTATTCCAAAACGTGCCCTGTATGCCATGCAACGTTTTCACAAACGTCTAGTTTGAAAAGCCACTTTCTTCACCATCACGCCCCAGACAAAAGCCGCTTTAAGTGTCCCAGTGCTTCGATGGCTTTTGTATCCCACAGTCAAAGGAAGAGACACCAGCAGAGCAAAAGAGGTTGTCGGTTAGAGAGAGTTTACAAACATGCGACTAAGCCAGCATGGTCACTGGCTCCAAGGGAAAATAAAAATGACATTCCTCAGCCTTCCAGTACAGCAACCCAGGAACCACCAATCTCTCAAGCCCCCACCACTACAGCACAGTCCTCTAATAAAAAGACAATTCCTAAAGCATGTCCTCTATGCCAGAAGACTTTTAAATTTGAAGCTACAATGGTAAGGCACATTGCTTCACACCAAAAGGAAAGTCTCAACAAGTGCCCTGACATCTTGAAGTGCACATTTTGTGATGAGATCTTTTCTCAGGGCATGGACCTGAAGAGCCACTACAGTCGTACTCATCAATTTACGGGACCGTTCCCCTGCCCTTCTTGTCAGAAGACTTTTGTTTCGTTAACTGAGCTGCGCTTACATCAGAGAAATGAGTCCACTCCTTACCAGTGCTCAGTGTGCCAGCGATTATTCCGAACACAGTATACCCTGACTATTCACGAGCgaattcacacaggggagaaaccattcCTCTGCGCTGAGTGTGGAAAGGGTTTCCGGAGTGAAAAACTACTGCAATCACACTCTAAGAGTCATGTCGAGGGAAAACCCCACGCTTGCTCCACCTGTGGGAAAAGGTTCCAGAGAAAAGAGCTATTGAAACAACACATGTTGCATCACACAGATGCTGCTTTCATCTGCCCAGACTGTGGGAAGAAGTTTTTTCAGTTGGTATGGTTAAGAAGGCATATGTTAATGCACACTGGCGAGAGACCGTTCCTCTGTgacctctgtggaaagggtttcaaATCTACGGCTGAATTGAGGATTCACACCCGGACACACACTGGAGAACGGCCATTCAAGTGTCCAGAATGTGGCAAAGGTTGTAGGCAGAAGAGTGAGCTGCAGGAGCATCTGCGGAGGCACACAGGGGAGCGGCCGTATCCGTGCACAGTGTGCGATAAGCGCTTTTATGTCAGCAAAGATAGAAAACGACATATGCTCATACATACTGGAGAGAAGCCGTTCAAATGTCAAGCATGTGGCATGGCCTTCAACCGTAAAGCACTTTTGAGGGTACACCAAAAAAACAAGTCGTGTTTATATAGCCACACAAGTCCCCTACATTACACTCCCCTACATTACACGTCATTGTAATGTTGGGGATTTGTGTGGTGTGATCAGTGTTGGGATTCATTACTTAGAAAAGTAATCTATTGTTAGGTTTAACAAAATTAATCTTGTCAAGTTATAATATGGTTGCATGGAAAGTAATATATTACATATCACTTGTtgcaattgttgttgtttttcttctcCGCTGgtcattcagcaccatggagctCCACTATAGGCCTACCTGTATCAGATGAGCAAAGCCACCCCTAAGGCGCTATCCTAGGTGCTGAATCCTTCATTCACAATTACAATTGATAGCCTGATATTGTCACCCATCGGACTTGTGAATTTAATCTGATCTTTAGACTGCAtctattgttgttattattattattatttattatatgtgTGAAATAATTTTAAATGTAGTTTTGATTGGCCGTTAGTCAACTGTCGGGTGACGGAAAGGCAGCATGGGAAAAAA

Function

NR:

description
uncharacterized protein LOC109903637

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561940.2 True 5203 mRNA 0.46 8 34273307 34286246

Neighbor

gene id symbol gene type direction distance location
LOC110487599 LOC106569987 coding upstream 41454 34206176 ~ 34231853 (+)
LOC110488377 LOC105025850 coding upstream 79651 34171145 ~ 34193656 (+)
LOC110488374 LOC106569985 coding upstream 127865 34135781 ~ 34145442 (+)
LOC110488373 LOC106570161 coding upstream 141321 34126252 ~ 34131986 (+)
LOC110487598 NA coding upstream 166593 34096452 ~ 34106714 (+)
LOC110489288 f131b coding downstream 87872 34374118 ~ 34395409 (+)
LOC110489290 LOC106569995 coding downstream 157906 34444152 ~ 34462496 (+)
LOC110489308 LOC106570000 coding downstream 236008 34522254 ~ 34567625 (+)
LOC110489311 LOC106570010 coding downstream 602640 34888886 ~ 34894719 (+)
LOC110489298 LOC106570012 coding downstream 651849 34938095 ~ 34941903 (+)
G2321330 NA non-coding upstream 19686 34253343 ~ 34253621 (+)
G2321327 NA non-coding upstream 23254 34249850 ~ 34250053 (+)
G2321274 NA non-coding upstream 123982 34147411 ~ 34149325 (+)
G2320420 NA non-coding upstream 263880 34009175 ~ 34009427 (+)
G2320419 NA non-coding upstream 264211 34008809 ~ 34009096 (+)
G2321347 NA non-coding downstream 4047 34290293 ~ 34345648 (+)
G2321351 LOC106570163 non-coding downstream 10845 34297091 ~ 34300833 (+)
G2321372 NA non-coding downstream 42129 34328375 ~ 34328740 (+)
G2321378 LOC106569991 non-coding downstream 50864 34337110 ~ 34354024 (+)
G2321397 NA non-coding downstream 87493 34373739 ~ 34373999 (+)
G2320160 NA other upstream 821687 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1103190 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1329915 32942203 ~ 32943392 (+)
G2318792 NA other upstream 2318794 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 2331393 31934883 ~ 31988737 (+)
G2321656 LOC105025880 other downstream 562932 34849178 ~ 34850391 (+)
LOC110489302 LOC106570022 other downstream 683975 34969069 ~ 34972560 (+)
LOC110487604 LOC106570016 other downstream 986893 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 1154788 35441034 ~ 35521453 (+)

Expression


Co-expression Network