LOC110489290 (LOC106569995)


Basic Information

Item Value
gene id LOC110489290
gene name LOC106569995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34444152 ~ 34462496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561991.2
CACACTAAAAGCCCAAAACAGAACTCACCGTGAGCAGGTGATAAGGGTGAGGAGGAAAAGGTGCAGGAGAGGGCAGGGCTAACCTGGGAGAGTGACAAAGCAGACACAAGGAAAGAGACGCAACAGAAGGGAGAGATTGACAGATAGAGAAGTTGGGAAAGTGGGAGAGGCCGATTGTCACACGCTGGGGTTATAATACAATGGAGGGTGGTAGACGATCGTTAATATCAAAAGTGTGATTCTAGTACTGCTTCTCGTGAGGAGGGGCACTACAGAAGCTTTGGATGCTGAGGACCTAATACCATTACACATCATTGAGACTCAGCCTTACACAGGGAGCATGCCACGATGTCATCCTACTCTGATGCCGATAATCAGTGTCAACCGGGGAACACCATCTGTGagatCACAGTGTATGAACAGGAAGTGATCATCGTGCCCGTCCTGCTCCTGGCAAGCTTCCTGGTCAGTCTGCTAATCGTTCTCCTGCTGAGGTACTGCACTGGAAAGGAAAACCGCAGACGACCCACAGTAACCCTAGCCCGACCACACAGCACCAGCACggcaagcagacacacacagaggaaaagTACCAGACGGAACACACAGGGCATTGAGGCTCCTCCTGAGCTGAACCCTCTGGAGCATGAGGAGTTACCTATGAGCACTCCGACCCGGCGTGACGCCCTTGCCACGTTGTCTGCCGTACCGGAGACGCCCAAAGAGAGACAGCATGGCTCTTTCAACCTGGTCACTCCGCTGCCCCTCTCCTTCCCCGTCAAACCGGACGACTCTGTCACCCTCTACAGGGCAAGGATGGACAACAGAAACGTGGTTCTAAGGACACTTAAAGAAAAAGCCGATGACAGCGAGCGGCAATCCTTCCTGGGCTTTGCCTCCTTCCTGTCTGAGCTGGGGCCCCACCCCTTTTTGCCTGGTCTGATGGGTGTGGTCTCCCTACGTACCCCCCTCATCACCGTGATGGAGGAACTGGTGCACAGGGACCTGCTGGGGTTCCTATGGAGGTGTCGACAGGACACGAGTGTGGAGTCCCCGTGCGATATCACAGAGCAGCGCATCTTCACCATGGGAGGACAAGTGGCTTCTGCTCTGGAATACCTGCACGGTCAGAGGTGTATCCATGGCAACGTTGGAGCTCGGAGCGTGCTGGTTGGTCTAGACCTAACGGCTAAACTGTGGGGATTGGGTCCAGCATACTGTAAGAAAACACAAGCAGGAACTCCAGGAGAGCTGCAGAACGTTGAGATGAGGAAGTGGCAGGCTCCAGAAGTATTGGCAAGGAGACCTGTCAGTCAAAGCAGTGACGTCTGGTCTTTTGGGATCCTGCTCCATGAAATAGTGACACTAGGTGACCCACCATTCCCTAAAGTCATGGCCGGTGATCTTCTTCAATACCTCCAGAGAGGAAAGACTCAGAAGAGACCCGCTAATTGTTCTAACTCACTGTATTCCATAATCAAGTCCTGCGGCCAGTTCGCTCCACATGAGCGTCCTACATTAGCTGAGGTGATCCAGAAGCTCCAATCAGGAGAGAAGAGTGCCAACAATAGGACAGTTCTTCGAGTGCCTGAGCCACTGGACATTGAGAAGTACCTGCGGGAGGCGGGATATGGAGAGGCCTACAATTACGTTGTTCTCTGATTGGCTCCTGCGATGGTCGTTTAAATCAAGGTCTACATTACGTTCAGTGTTGCTTTTCTCACATTATCATGAAGACTGTTGGGAGAGCGTTTAAAATGTCAAAACAACACGACTAGTTTATCTTTAGGTCCCTTACTATGCTCAAAACAACGTAAGAGACTGATGAAACACTCAGGTATTAACACATacagcattcggaaagtattcagaccccttgactttttccacattttgttacgttaaagccttattctaaaatggatttaaaaaaataataatcctcagcaatctacgcacaa

Function

NR:

description
tyrosine-protein kinase STYK1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561991.2 True 1961 mRNA 0.51 10 34444152 34462496

Neighbor

gene id symbol gene type direction distance location
LOC110489288 f131b coding upstream 48743 34374118 ~ 34395409 (+)
LOC110489266 LOC106569989 coding upstream 157906 34273307 ~ 34286246 (+)
LOC110487599 LOC106569987 coding upstream 212299 34206176 ~ 34231853 (+)
LOC110488377 LOC105025850 coding upstream 250496 34171145 ~ 34193656 (+)
LOC110488374 LOC106569985 coding upstream 298710 34135781 ~ 34145442 (+)
LOC110489308 LOC106570000 coding downstream 59758 34522254 ~ 34567625 (+)
LOC110489311 LOC106570010 coding downstream 426390 34888886 ~ 34894719 (+)
LOC110489298 LOC106570012 coding downstream 475599 34938095 ~ 34941903 (+)
LOC110489330 LOC104962755 coding downstream 498241 34960737 ~ 34966594 (+)
LOC110489302 LOC106570022 coding downstream 506573 34969069 ~ 34972560 (+)
G2321396 NA non-coding upstream 47011 34396475 ~ 34397141 (+)
G2321397 NA non-coding upstream 70153 34373739 ~ 34373999 (+)
G2321378 LOC106569991 non-coding upstream 90128 34337110 ~ 34354024 (+)
G2321347 NA non-coding upstream 98504 34290293 ~ 34345648 (+)
G2321520 NA non-coding downstream 120671 34583167 ~ 34583397 (+)
G2321552 NA non-coding downstream 178478 34640974 ~ 34641243 (+)
G2321559 NA non-coding downstream 183947 34646443 ~ 34649465 (+)
G2321562 NA non-coding downstream 190725 34653221 ~ 34653434 (+)
G2321563 NA non-coding downstream 191812 34654308 ~ 34654535 (+)
G2320160 NA other upstream 992532 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1274035 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1500760 32942203 ~ 32943392 (+)
G2318792 NA other upstream 2489639 31953622 ~ 31954513 (+)
G2321656 LOC105025880 other downstream 386682 34849178 ~ 34850391 (+)
LOC110487604 LOC106570016 other downstream 810643 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 978538 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 1028635 35491131 ~ 35498127 (+)

Expression


Co-expression Network