LOC110489308 (LOC106570000)


Basic Information

Item Value
gene id LOC110489308
gene name LOC106570000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34522254 ~ 34567625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562021.2
TTTACAATCAGTGTTCACGTGAAACAATGAGACGATAGACAGTCCGAACTTAATACACTGAAATGGGGAATAAGCTGCGTTCTCCCTCCTGGCTTCTCCTCCATATCGCTGTTTCCCAACATTTACACGGAAGCTACCTCTCTTTTTGCTCTTTTTTTTCTAATCTATTCTATCTTTTGAACCATTTTTCATGATGACCCGCTCATTGCACACTTCTTACAAACCACCTTTTACATCAAGCTTTCGATGTCTGGTGTTAATACCTAACTATTAATGATTTGTGTCGactcaaaaaaacaaaaaaacgaatATACATATTTTCTGCACTGATAATCCTTAATATGCCTTATCCCTTTTTTATGGTGGGTTTGGTATGTTTGCTTTATAAACGGAGTCAGTGCTGCTAAATCCCATTTCCCTTCTTTCCCTGTCTACCATCCTTTCTATCGCTCCACTGCCACCTCACAATATAAACCCattccctgtctcctccttcccTACACTCTCTACCTGTCTTTATCCATtattcctattttttttttttcaatcgtAAACATCTGAAAAGCCATGTGGTCCACCTTCTTTCTGCACGAAGAGGATGGCAGGCCGATTCCACCAGGGGCAGGAGTAGGAGCCGGAGCAGGTACTCTGGGACTGACCGGTGTCATGGGTGGCAGAGGGGCTGGGGCTGGTGCTATGGGAGTTAAGCGCCGTGCAAAAGCGTCAACATCAGGAGGCATGAGCGAGGTCCAGGAGGGCAAGATCAAGCTGGCGTTCTTCGTGGCCATCGTGGGTGTGGTGTTGACTGTCTTGGGCTTGGGCACAGAGTATTGGGTGGTGCTGTCTCCGCCCAAGAACTTCTACAACAACCAGACATGTCTGGCAGCACACTACGGGCTGTGGAAAGGATGCACCCGGACTCTGTGGGTGGCTGACATAGACCCTGAGCGAGAGAGCTGTGGGCCGGCTGAACTGCCAGGAGAATCCAACTGCACCTACTTCAAGTTCTACACCACTGGAGAGAATGCCGTCATCTTCCAGAAGACAACAGAAAAGAGTCTGAATGTGGCGGCGGCCATGATGGCCCTCTTCGGTCTCTTCCTGATGGTCACAGGGGCCATATGCATCACCACAGCCCTCAGCAAAGGAGAATCATTCTTCCTCAAGGCTGCATCGGTTTGCTTCATTCTGTCAGgCCTCTTGATTCTCCTGTCTCTTATTGTTTTCAACCAATCGGTACTCTCCTTCCTAGCCAGTGACCACTCGGTGCCGTTGCATCATGAGTTGTCTTGGTCAGTATCCTGTGTTGGGTTTGCAGGGGCCATTCTTATTTTGGGCGGAACCCTCTTTCTCTTGCTTGCGCTACCATTCAGCCCCTGGCGAAGGTGttttccccccaaaaatgaaaGTGATAGCTAGTAGCGAGGAGGAGGTATTGCACTTTATCTGTATTGTCTTATGACTGTTGAGAAATGGACGGTCTCCTGCAATTTTACATTGAATCATTTGAAGTTGTGTAAAGAGGGGTTCAAGTTGTTCATCGTCTtggatgtttttttctctcctcaTTTTGCATAAATCAGTAGGTCATTGAAGGGACACTATACTGTTCTTGACTTATGTAAGGTGAAGAATTAACGCAATGCCAAATGACTTGTGTGCTAGTTGACAGCAAACGTTTTCTCACATTGAATGTGCAAAATGTAATGTGCCCCCCCTTCTCAAGTGTGAAATTCAATTGAATTCAAAatcattttaaatgaatttaaCAAAAACAACAATTTTGCAGTTGTGTTTTGAATTGGTTAacattatttcattatttttgcCAAATCTTTGATGATATTCTGATCGACAGTCTTATTAGAGAGTATAATCCTTAAGGACAGTAATTGGGATTCAGATGTATTTCACAGAATGAAAGTACAGTACAAAAATTCTAGAGTTTCtagtaaataaatacatacacaaTCTCATGATATTGCAATGTTTTTACAACTGCCTTTAATATACGGATGTGTATATATCGAAGAGACAATAGCCTCTAAATCCAAATGTTTTCAGACCTCAAAGGTCAAGATTAGTCTACGTCCCAGGCCATCATGTTTGTGAATTCAGTTATATGTCACATTATAAAAGTAATGTAAAAAGACAAGCACCATGTAAATTCCAGATATGCAGAGCTTCTGTTTTCCATTAAGTTGTGTAGTGTAAGATGTGTGGACTCCTATTGACATTAGACTACTTTCGAGGTCTAAAATTTGATTTTGGAGTCTAATGTCCCTTAAAATTTTAGATACACCATCTGCTCTGGGTGTGTGGGTGACTATATTATAGAAATTACAATAAATTATTAACGCGGCACTGCCTAAAAACATCACTGCCTGAAAGGACAGGCAATTTCATCGTAAACCCTATTCAAGAGGTAAGAGGCTACTAACCAGTTATATAAGGTTGCATTGTAAATACTCTATTCAAAGTCATATGAGCCTTTAGTGTTGTAAATTAATAACGTAAAAACATTTCATGTGTTCTGTGCAACCCAAATGTCACACGTTTATAAATACTGTAAGATTTTGTATCTGTTTGGTCTTTTTCTAGTGAGATAGTTGTCAGAGGTAACCTGtgcatatctgtatttcaatgGGTATTGAAGGGTAAATTGTGTCTGTGGTTTTCAATGGAAATAATTGTGTATGTAAGACTTGATTTATTATTAAAtgtgaagacaacatactgta
>XM_021562020.2
ACCCTCTTTCCACTGCccatacctcctctcctctcttcctctgcgatccctctctcgctcactccctctcctcgcctcgccCTTTTTCATTCCCGaactgaaccacacacacacaccaagcagAATAAGCTGCGTTCTCCCTCCTGGCTTCTCCTCCATATCGCTGTTTCCCAACATTTACACGGAAGCTACCTCTCTTTTTGCTCTTTTTTTTCTAATCTATTCTATCTTTTGAACCATTTTTCATGATGACCCGCTCATTGCACACTTCTTACAAACCACCTTTTACATCAAGCTTTCGATGTCTGGTGTTAATACCTAACTATTAATGATTTGTGTCGactcaaaaaaacaaaaaaacgaatATACATATTTTCTGCACTGATAATCCTTAATATGCCTTATCCCTTTTTTATGGTGGGTTTGGTATGTTTGCTTTATAAACGGAGTCAGTGCTGCTAAATCCCATTTCCCTTCTTTCCCTGTCTACCATCCTTTCTATCGCTCCACTGCCACCTCACAATATAAACCCattccctgtctcctccttcccTACACTCTCTACCTGTCTTTATCCATtattcctattttttttttttcaatcgtAAACATCTGAAAAGCCATGTGGTCCACCTTCTTTCTGCACGAAGAGGATGGCAGGCCGATTCCACCAGGGGCAGGAGTAGGAGCCGGAGCAGGTACTCTGGGACTGACCGGTGTCATGGGTGGCAGAGGGGCTGGGGCTGGTGCTATGGGAGTTAAGCGCCGTGCAAAAGCGTCAACATCAGGAGGCATGAGCGAGGTCCAGGAGGGCAAGATCAAGCTGGCGTTCTTCGTGGCCATCGTGGGTGTGGTGTTGACTGTCTTGGGCTTGGGCACAGAGTATTGGGTGGTGCTGTCTCCGCCCAAGAACTTCTACAACAACCAGACATGTCTGGCAGCACACTACGGGCTGTGGAAAGGATGCACCCGGACTCTGTGGGTGGCTGACATAGACCCTGAGCGAGAGAGCTGTGGGCCGGCTGAACTGCCAGGAGAATCCAACTGCACCTACTTCAAGTTCTACACCACTGGAGAGAATGCCGTCATCTTCCAGAAGACAACAGAAAAGAGTCTGAATGTGGCGGCGGCCATGATGGCCCTCTTCGGTCTCTTCCTGATGGTCACAGGGGCCATATGCATCACCACAGCCCTCAGCAAAGGAGAATCATTCTTCCTCAAGGCTGCATCGGTTTGCTTCATTCTGTCAGgCCTCTTGATTCTCCTGTCTCTTATTGTTTTCAACCAATCGGTACTCTCCTTCCTAGCCAGTGACCACTCGGTGCCGTTGCATCATGAGTTGTCTTGGTCAGTATCCTGTGTTGGGTTTGCAGGGGCCATTCTTATTTTGGGCGGAACCCTCTTTCTCTTGCTTGCGCTACCATTCAGCCCCTGGCGAAGGTGttttccccccaaaaatgaaaGTGATAGCTAGTAGCGAGGAGGAGGTATTGCACTTTATCTGTATTGTCTTATGACTGTTGAGAAATGGACGGTCTCCTGCAATTTTACATTGAATCATTTGAAGTTGTGTAAAGAGGGGTTCAAGTTGTTCATCGTCTtggatgtttttttctctcctcaTTTTGCATAAATCAGTAGGTCATTGAAGGGACACTATACTGTTCTTGACTTATGTAAGGTGAAGAATTAACGCAATGCCAAATGACTTGTGTGCTAGTTGACAGCAAACGTTTTCTCACATTGAATGTGCAAAATGTAATGTGCCCCCCCTTCTCAAGTGTGAAATTCAATTGAATTCAAAatcattttaaatgaatttaaCAAAAACAACAATTTTGCAGTTGTGTTTTGAATTGGTTAacattatttcattatttttgcCAAATCTTTGATGATATTCTGATCGACAGTCTTATTAGAGAGTATAATCCTTAAGGACAGTAATTGGGATTCAGATGTATTTCACAGAATGAAAGTACAGTACAAAAATTCTAGAGTTTCtagtaaataaatacatacacaaTCTCATGATATTGCAATGTTTTTACAACTGCCTTTAATATACGGATGTGTATATATCGAAGAGACAATAGCCTCTAAATCCAAATGTTTTCAGACCTCAAAGGTCAAGATTAGTCTACGTCCCAGGCCATCATGTTTGTGAATTCAGTTATATGTCACATTATAAAAGTAATGTAAAAAGACAAGCACCATGTAAATTCCAGATATGCAGAGCTTCTGTTTTCCATTAAGTTGTGTAGTGTAAGATGTGTGGACTCCTATTGACATTAGACTACTTTCGAGGTCTAAAATTTGATTTTGGAGTCTAATGTCCCTTAAAATTTTAGATACACCATCTGCTCTGGGTGTGTGGGTGACTATATTATAGAAATTACAATAAATTATTAACGCGGCACTGCCTAAAAACATCACTGCCTGAAAGGACAGGCAATTTCATCGTAAACCCTATTCAAGAGGTAAGAGGCTACTAACCAGTTATATAAGGTTGCATTGTAAATACTCTATTCAAAGTCATATGAGCCTTTAGTGTTGTAAATTAATAACGTAAAAACATTTCATGTGTTCTGTGCAACCCAAATGTCACACGTTTATAAATACTGTAAGATTTTGTATCTGTTTGGTCTTTTTCTAGTGAGATAGTTGTCAGAGGTAACCTGtgcatatctgtatttcaatgGGTATTGAAGGGTAAATTGTGTCTGTGGTTTTCAATGGAAATAATTGTGTATGTAAGACTTGATTTATTATTAAAtgtgaagacaacatactgta

Function

NR:

description
voltage-dependent calcium channel gamma-6 subunit-like

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562021.2 False 2741 mRNA 0.41 5 34522254 34567625
XM_021562020.2 True 2796 mRNA 0.42 5 34554920 34567625

Neighbor

gene id symbol gene type direction distance location
LOC110489290 LOC106569995 coding upstream 59758 34444152 ~ 34462496 (+)
LOC110489288 f131b coding upstream 126845 34374118 ~ 34395409 (+)
LOC110489266 LOC106569989 coding upstream 236008 34273307 ~ 34286246 (+)
LOC110487599 LOC106569987 coding upstream 290401 34206176 ~ 34231853 (+)
LOC110488377 LOC105025850 coding upstream 328598 34171145 ~ 34193656 (+)
LOC110489311 LOC106570010 coding downstream 321261 34888886 ~ 34894719 (+)
LOC110489298 LOC106570012 coding downstream 370470 34938095 ~ 34941903 (+)
LOC110489330 LOC104962755 coding downstream 393112 34960737 ~ 34966594 (+)
LOC110489302 LOC106570022 coding downstream 401444 34969069 ~ 34972560 (+)
LOC110489317 LOC106570014 coding downstream 414105 34981730 ~ 34988181 (+)
G2321440 NA non-coding upstream 55130 34453809 ~ 34467124 (+)
G2321396 NA non-coding upstream 125113 34396475 ~ 34397141 (+)
G2321397 NA non-coding upstream 148255 34373739 ~ 34373999 (+)
G2321378 LOC106569991 non-coding upstream 168230 34337110 ~ 34354024 (+)
G2321372 NA non-coding upstream 193514 34328375 ~ 34328740 (+)
G2321520 NA non-coding downstream 15542 34583167 ~ 34583397 (+)
G2321552 NA non-coding downstream 73349 34640974 ~ 34641243 (+)
G2321559 NA non-coding downstream 78818 34646443 ~ 34649465 (+)
G2321562 NA non-coding downstream 85596 34653221 ~ 34653434 (+)
G2321563 NA non-coding downstream 86683 34654308 ~ 34654535 (+)
G2320160 NA other upstream 1070634 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1352137 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1578862 32942203 ~ 32943392 (+)
G2318792 NA other upstream 2567741 31953622 ~ 31954513 (+)
G2321656 LOC105025880 other downstream 281553 34849178 ~ 34850391 (+)
LOC110487604 LOC106570016 other downstream 705514 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 873409 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 923506 35491131 ~ 35498127 (+)

Expression


Co-expression Network