LOC110489292 (LOC106570001)


Basic Information

Item Value
gene id LOC110489292
gene name LOC106570001
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34569560 ~ 34580990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971469.1
CCCGTTCCCTCTTgctttatatatccctctctcagTGTGAAATGTGGAAACGGATCAGCTTATTTCCTTTCTGGTCTGTCATCGCAGAATGAGCAACACTGAGATGCCTGCCAGTGCCATGACCACCCACTGAGAAGAGGGACGGAACCGTGAGTTGCGGATCCACGCTCACATACAGACGAACCAGAGAGTGTGAAAGAGGAAGAACacgggagcagagagagagagacacacacacaggggaacgagagagaagagaggaaacgaGAGCGGGAGAGCGGTCGATGGATGGCGCTTGGACAGAGGGGACTCTGAAGGCGCACTCTTCACTGACGAGGAACAGCAAGCTGCAGACATGGAGGCAAAAGGCAGAGGCATGCCCCAAGTCATGGTGTGGTGGGAGAAGGGGATCCAGGTTGTCCTCACCACTTTGGGGGCGTTTGCAGCCTTTTCCCTGATGGCGGTGGCCATTGGGACGGACTACTGGCTGTACGCACGGGCCTTCATCTGCAACAGCACGGCCAACTCCTCCCAGGACGACCCCAACAACAAGGACAAGAAAGACCCTGGAGCCCTCACACACTCTGGCCTCTGGAGGATCTGCTGTCTGGAGGggctgaAGAGAGGAGTGTGTTCTCAGATCAATCATTTCCCGGACGATGCAGACTATGATCAGGATGCAGCAGAGTATCTCCTGCGTGTGGTCCGAGCCTCCAGTATCTTCCCCATCCTGAGTGCTATACTCCTCCTGATGGGAGCGATGTGTGTTGCATCCAGCAGCTTCTACAAGAGCAAGAGGAACATCATCCTAGGAGGAGGCATCCTGTTTGTGGCTGCTGgCCTGAGCAACATCATCGGCGTGATCGTGTACATCTCTGCGGCACTGAGCGACATCTCGCCCAAGAAGGATGAGGACAAGAAGTGGCATTACTCATACGGCTGGTCCTTCTACTTCGGAGGCCTCTCCTTCATCctggctgagatggtgggtgtcctGGCCGTCAACATCTACATCGAGAAGAACAAGGAGCTGCGCTGCCGCTCTCGCACCGAACTCTTGAAGAGCACCACGCACGCCATGCTCCGCCTGCCCAGCTACCGCTTCCGCCGGCGCTCCCACTCCAGCTCGCACTCTTCCGACCCGCCACGCTCCCCCTGCGACACCTCACCTACAGGCGCCAAGAGTTTTGCATTACCGCCGTCTGCCCCGCCTTTCTCCGTTGCCACCCTGCCAAACCCGCACCATGCTGCTGGAGGAGTAGGGGGCGATATCTCCATGTATACCCTGACCCGAGACTCCAAGATGGGGAGTCTTGGTGGCGGGGGACCCCCCCTCTACGGCACCGTGGACCGGGCCTCCCTCTACCAACTGCACAACTACTTCCCTAAAGAGGAAGTGGGGGTGATGATGAGCGGCACGCTGCCTTCTCTCTCCAAGTCCAACCTCTCTGCGGCGGGCCAGAATTCCGCCGTCGGAGCCACTGCCATTGCGCCCCTGAATACCTTGTCGTCCTCCGGTCCTACCCCCCAGCAGCCACCTCTGCCCACTGGtaccatggagagagagaggggcatgggCACCCTGGACCGCCTGGGGGGCAAACGGAACAGGGACACCGACTCGGACACGCTGAACAGGAGAACCACGCCAGTGTGAGCCTCGGAGATAGGAGCAAGAGCCATGGAGGTGGAGGGCAAAATGGCGGGTAACGCTTTACAGTAAATCCCTGTCGCACAACCTACTTTTCGCTGCCATAACAATGACTTAACAAGTGACGCTTTCCAGTTCACTACTGGTAAAGCCTACTGTTCGCTGCCATACATAACAATGACTTTGCGTATTTTATAAGCAGTCACGACAACTAGTGTAAATTCATGACAACTGCCTTAACACGGTCATGACGGCTCATACGGTGGCCTAAGTTCTGTAGTTAGCTTGCATAGGTAGCTTGCACATGCTTGCTGTATGCGACATACTAGTATTTGACTACCTAATGTATTCGTGTTTATGACTGCTTATGACACTGATATTTCGAGGACTGTATGACAGGGCTTCTGTAAAGggttaccaaatagggctgtagAAATATGTAAGATAACTGAAAGAGAATAGTTGGCCATTCCCTGCCCTATCACTCCATCTCAGTCTGTTTTTGACTACTATGAATACATCTATTCCACTGACTAGAATATCAAATGTATTATTAACAATATTATTGAGTATATATTCATTTTGAAATGCACAATATGTCTATAGTGGTAAACTTTGGGTTGTCTTATCATTCCGAGTGCTTGATTATCATAGCCAGGTTACAAGAGTGTAAAGATTGTAACTTCTTGAATATTATCACATTGCTGTTGTTTTTATTCACGTAATCGTAAATGCAGGGTAAATTTGTACATTTTGAACTatgatttttgtatttttgtatttctttaaAGTTGAAAATGTTCCTTGATATCTAGCTCCATCACACTTAATCTGATGGTGTCAGGCGAGAAGCATGTGCGCAAATATGAGTGTAATATTGTATTTATATTTCATTTTAaatcatcaaaatatatttattttattattattatttataataatagtcactattattattattgttatacttattgttattatttttaagGCAATTTTTTGGTTTGTTAATACAGATATAACCAACATAGTCTAATCTGTGTTTTTTATTGTTTATGACAAGTGTATTAGATTCTAGACTTTATATGAACCTATTTATTTTAGCGATGGTATATATTCTTAATGTTATTCTTTAAAGCAGCGATTCTCAACTGATGGGTCGCGACCCAAATTTGGGGTCGAATGGGTCACAGTCTGAACTTAAACGACTAAAACCAGGTAGTAAGTGATTAAACAATTGAATTTCTGAAATATTTTTCTTCAAACATAGTATTTTCAAAATAGAGCTAGCAGGGCTATTTAGCGGATTTAGTTGATTTTGTGGTGTCAAACCAGTGAGCTTATCCACATTCTTCATCAAGAATATGGGCAAATTTGACTTATTTCCTTAGCATCAAAAATACATTCCAGATGACATTTTATATACACTATGCGAATATTGGGTTGCGACTGGGACAACCTGGTTTAATCTGGGTCCCGAGGCAAAACCAGTTAAGAACCGCTGCTTTAAGGAGCCTACTTTGGGGTTAGCGGGCTGTGATCCTGTGATCCTGTAAGTGAAGAAGACAACAATCTCTTCATGGTACATGATATTTCTACTCTACTGCACATGAGTCAAACTAAGGACATTTGTGATGTTTAAGCAATACAAAATTCTGAGCCTCAAAAACAActacaaaaaaatacattcaatAAACTTATATAT
>XM_036971468.1
TGGCAATGGATAGAGCACGCTCTCTCACTTCTTTCCCGTTCCCTCTTgctttatatatccctctctcagTGTGAAATGTGGAAACGGATCAGCTTATTTCCTTTCTGGAGCAACACTGAGATGCCTGCCAGTGCCATGACCACCCACTGAGAAGAGGGACGGAACCGTGAGTTGCGGATCCACGCTCACATACAGACGAACCAGAGAGTGTGAAAGAGGAAGAACacgggagcagagagagagagacacacacacaggggaacgagagagaagagaggaaacgaGAGCGGGAGAGCGGTCGATGGATGGCGCTTGGACAGAGGGGACTCTGAAGGCGCACTCTTCACTGACGAGGAACAGCAAGCTGCAGACATGGAGGCAAAAGGCAGAGGCATGCCCCAAGTCATGGTGTGGTGGGAGAAGGGGATCCAGGTTGTCCTCACCACTTTGGGGGCGTTTGCAGCCTTTTCCCTGATGGCGGTGGCCATTGGGACGGACTACTGGCTGTACGCACGGGCCTTCATCTGCAACAGCACGGCCAACTCCTCCCAGGACGACCCCAACAACAAGGACAAGAAAGACCCTGGAGCCCTCACACACTCTGGCCTCTGGAGGATCTGCTGTCTGGAGGggctgaAGAGAGGAGTGTGTTCTCAGATCAATCATTTCCCGGACGATGCAGACTATGATCAGGATGCAGCAGAGTATCTCCTGCGTGTGGTCCGAGCCTCCAGTATCTTCCCCATCCTGAGTGCTATACTCCTCCTGATGGGAGCGATGTGTGTTGCATCCAGCAGCTTCTACAAGAGCAAGAGGAACATCATCCTAGGAGGAGGCATCCTGTTTGTGGCTGCTGgCCTGAGCAACATCATCGGCGTGATCGTGTACATCTCTGCGGCACTGAGCGACATCTCGCCCAAGAAGGATGAGGACAAGAAGTGGCATTACTCATACGGCTGGTCCTTCTACTTCGGAGGCCTCTCCTTCATCctggctgagatggtgggtgtcctGGCCGTCAACATCTACATCGAGAAGAACAAGGAGCTGCGCTGCCGCTCTCGCACCGAACTCTTGAAGAGCACCACGCACGCCATGCTCCGCCTGCCCAGCTACCGCTTCCGCCGGCGCTCCCACTCCAGCTCGCACTCTTCCGACCCGCCACGCTCCCCCTGCGACACCTCACCTACAGGCGCCAAGAGTTTTGCATTACCGCCGTCTGCCCCGCCTTTCTCCGTTGCCACCCTGCCAAACCCGCACCATGCTGCTGGAGGAGTAGGGGGCGATATCTCCATGTATACCCTGACCCGAGACTCCAAGATGGGGAGTCTTGGTGGCGGGGGACCCCCCCTCTACGGCACCGTGGACCGGGCCTCCCTCTACCAACTGCACAACTACTTCCCTAAAGAGGAAGTGGGGGTGATGATGAGCGGCACGCTGCCTTCTCTCTCCAAGTCCAACCTCTCTGCGGCGGGCCAGAATTCCGCCGTCGGAGCCACTGCCATTGCGCCCCTGAATACCTTGTCGTCCTCCGGTCCTACCCCCCAGCAGCCACCTCTGCCCACTGGtaccatggagagagagaggggcatgggCACCCTGGACCGCCTGGGGGGCAAACGGAACAGGGACACCGACTCGGACACGCTGAACAGGAGAACCACGCCAGTGTGA
>XM_036971467.1
GTCGTATCGTTTCGTTCTATTCTTGCAATGTCTACGGCTCTTTCTTACGTCTCTTGCCCATGCCTCGCATGCGGAGTCCGTCCACCGTCAACCACTGCAGAAGTTAAACAATTACAGGAGCAACACTGAGATGCCTGCCAGTGCCATGACCACCCACTGAGAAGAGGGACGGAACCGTGAGTTGCGGATCCACGCTCACATACAGACGAACCAGAGAGTGTGAAAGAGGAAGAACacgggagcagagagagagagacacacacacaggggaacgagagagaagagaggaaacgaGAGCGGGAGAGCGGTCGATGGATGGCGCTTGGACAGAGGGGACTCTGAAGGCGCACTCTTCACTGACGAGGAACAGCAAGCTGCAGACATGGAGGCAAAAGGCAGAGGCATGCCCCAAGTCATGGTGTGGTGGGAGAAGGGGATCCAGGTTGTCCTCACCACTTTGGGGGCGTTTGCAGCCTTTTCCCTGATGGCGGTGGCCATTGGGACGGACTACTGGCTGTACGCACGGGCCTTCATCTGCAACAGCACGGCCAACTCCTCCCAGGACGACCCCAACAACAAGGACAAGAAAGACCCTGGAGCCCTCACACACTCTGGCCTCTGGAGGATCTGCTGTCTGGAGGggctgaAGAGAGGAGTGTGTTCTCAGATCAATCATTTCCCGGACGATGCAGACTATGATCAGGATGCAGCAGAGTATCTCCTGCGTGTGGTCCGAGCCTCCAGTATCTTCCCCATCCTGAGTGCTATACTCCTCCTGATGGGAGCGATGTGTGTTGCATCCAGCAGCTTCTACAAGAGCAAGAGGAACATCATCCTAGGAGGAGGCATCCTGTTTGTGGCTGCTGgCCTGAGCAACATCATCGGCGTGATCGTGTACATCTCTGCGGCACTGAGCGACATCTCGCCCAAGAAGGATGAGGACAAGAAGTGGCATTACTCATACGGCTGGTCCTTCTACTTCGGAGGCCTCTCCTTCATCctggctgagatggtgggtgtcctGGCCGTCAACATCTACATCGAGAAGAACAAGGAGCTGCGCTGCCGCTCTCGCACCGAACTCTTGAAGAGCACCACGCACGCCATGCTCCGCCTGCCCAGCTACCGCTTCCGCCGGCGCTCCCACTCCAGCTCGCACTCTTCCGACCCGCCACGCTCCCCCTGCGACACCTCACCTACAGGCGCCAAGAGTTTTGCATTACCGCCGTCTGCCCCGCCTTTCTCCGTTGCCACCCTGCCAAACCCGCACCATGCTGCTGGAGGAGTAGGGGGCGATATCTCCATGTATACCCTGACCCGAGACTCCAAGATGGGGAGTCTTGGTGGCGGGGGACCCCCCCTCTACGGCACCGTGGACCGGGCCTCCCTCTACCAACTGCACAACTACTTCCCTAAAGAGGAAGTGGGGGTGATGATGAGCGGCACGCTGCCTTCTCTCTCCAAGTCCAACCTCTCTGCGGCGGGCCAGAATTCCGCCGTCGGAGCCACTGCCATTGCGCCCCTGAATACCTTGTCGTCCTCCGGTCCTACCCCCCAGCAGCCACCTCTGCCCACTGGtaccatggagagagagaggggcatgggCACCCTGGACCGCCTGGGGGGCAAACGGAACAGGGACACCGACTCGGACACGCTGAACAGGAGAACCACGCCAGTGTGA

Function

NR:

description
voltage-dependent calcium channel gamma-4 subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971469.1 False 3353 mRNA 0.47 6 34569560 34577840
XM_036971468.1 False 1674 mRNA 0.58 6 34571256 34577874
XM_036971467.1 True 1684 mRNA 0.59 6 34571256 34580990
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489323 LOC106569999 coding downstream 28759 34521179 ~ 34540801 (-)
LOC110489328 LOC105025867 coding downstream 63103 34499026 ~ 34506457 (-)
LOC110489278 LOC106569997 coding downstream 74039 34480758 ~ 34495521 (-)
LOC110489262 LOC106569996 coding downstream 90137 34464637 ~ 34479423 (-)
LOC110489263 LOC106569994 coding downstream 126973 34401725 ~ 34442587 (-)
LOC110489301 LOC106588444 coding upstream 3876 34584866 ~ 34622354 (-)
LOC110487602 LOC106570003 coding upstream 81306 34662296 ~ 34715706 (-)
LOC110489295 LOC106570004 coding upstream 164017 34745007 ~ 34762069 (-)
LOC110489256 LOC106570005 coding upstream 184027 34765017 ~ 34788139 (-)
LOC110487603 LOC106570007 coding upstream 208341 34789331 ~ 34803859 (-)
G2322242 NA non-coding downstream 197774 34371571 ~ 34371786 (-)
G2322236 NA non-coding downstream 203909 34365350 ~ 34365651 (-)
LOC110489314 LOC106569992 non-coding downstream 215916 34352791 ~ 34358527 (-)
G2322193 NA non-coding downstream 318584 34250758 ~ 34250976 (-)
G2322180 NA non-coding downstream 336176 34233083 ~ 34233384 (-)
G2322361 NA non-coding upstream 14531 34595521 ~ 34602314 (-)
G2322392 NA non-coding upstream 58621 34639611 ~ 34641015 (-)
G2322399 NA non-coding upstream 72083 34653073 ~ 34653590 (-)
G2322455 NA non-coding upstream 149033 34730023 ~ 34730312 (-)
G2322234 NA other downstream 208172 34361083 ~ 34361388 (-)
LOC110488358 LOC106569966 other downstream 1077562 33489584 ~ 33494907 (-)
LOC110488353 NA other downstream 1149464 33413400 ~ 33425462 (-)
G2320761 NA other downstream 1157058 33410499 ~ 33412502 (-)
G2322701 LOC106588461 other upstream 603894 35184884 ~ 35192129 (-)
LOC110489319 LOC106570022 other upstream 771798 35352788 ~ 35356932 (-)
G2322545 LOC106595184 other upstream 896924 35477914 ~ 35521454 (-)
G2322592 NA other upstream 987759 35568749 ~ 35569416 (-)

Expression

LOC110489292(LOC106570001) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110489292(LOC106570001) Expression in each Bioproject

Bar chart with 18 bars.
LOC110489292(LOC106570001) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network