LOC110489311 (LOC106570010)


Basic Information

Item Value
gene id LOC110489311
gene name LOC106570010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34888886 ~ 34894719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562029.2
GTCAATGCATCCTGGAACACAAACTCCGCTCTTGAATCCCCGTCACGTCATCGCCGTCTCGTGGCTTGTGAGTGTGTAGGCCACTCGCAAAAACACGAAAGGACCGATAAATACGACACACATCATCAATTTATTTGACATAAATGGCGGCCGAAGGCGAATATGAGTCAATCCTGTGCGTTAAACCCGACATCAATGTTTATCGCATACCACCGAGGGCTACAAATCGTGGATACAGGGCAGCAGACTGGAAGCTGGATGTGCCCGATTGGTCAGGGCGCATGCGGATCACGGCGAAGGGCAAAGTGGCCTACATCAAACTGGAAGACAAGGTCTCAGGGGAGCTGTTCGCCCAAGCCCCTGTCACAGAGTATCCCGGCATCGCAGTTGAAACCGTAAGCGACTCCAGTCGCTACTTTGTCCTGCGAATACAGGATGGCAATGGCCGCAGTGCGTTCATTGGTGTTGGATTCGGGgacagaggggactcttttgacTTCAACGTGTCTTTGCAGGACCACTTTAAGTGGGTGAAACAAGAGAATGAGATCAGCAAAAACCCTCAGGGGGCAGCTTCGGGACCAAAGCTGGACTTGGGATTTAAAGAAGGACAAACCATCACCCTTAATATTGGGCAAGGCAAAAAAAGAGATAAGCCACGCTCACAGGGGGCAGGTGGGTCTGTTCTCCTTCCACCGCCACCAAAAGGCAAGAtggctcctcctccttcctctaccTTCTCCAATCACAACACAGTGCCTCAAACAGGAGGCCCAGAGATCGgcTGTTTGCTAGATCTGGACAGTAGTAACTCCAACACTGTGGTCCAATCATCTAATCCCAGCACTGCTCTTTGGGGAGACTTCTCCACTCCTGCAAGTTCTCTCCCCCCAACATCGCGACAACAGCACACTCTGAATTGGGGCCAGTTTTGAGTCCACGTCACggcatgtttttttatttgattcCATCGCTGAACGCACCGCCTCCCTCTGTCACTACAATACAACAGAAAACTGTCCAAGAGGCAAGGAACACCATGCACTTCTAGAATGTCTttatcaaaactatgaatgaGTGTAGGCTatagtctccccccccccccccccaaagtaaaaaaaataataatgaagtCATATTTTGGATAATAATGCAAATCTATTGCACATATTCAATGTTTTGGCATATGAGATTTATGGTAGGTCTTCAATACCGCCTAAGGGCTATGATGATAGGATCTTCAATTTCTTGTTATCACAGGAATAGGAGCAATATTACAGTACTGCTTTTTACCCAGAAACAGTGCCCTCTTGTTAATGTTTACCTAATCATCACGACATGCTTGATTTATAGAGGGCAACCCATAGGGAGACGTCCTTTCCCATATGGTTTTCTTCTGATCATAATAGGGAAAAGGATTTGTAGTAATTAATTGCTAGGACAGTAGCTCAATTccgttttctcctctctcctcctctgtgcatttgttttctccccctcaaggatttaaaagcattggattagTATATGCATTGGCCTGAGGGAATCTACCATATTCCTTATGATTGCACACAAACTGTAGGCGCTTTTTGGGAGAACGGGGAGAAACGGAGTAGAGCTCATATTGATGAATGTATCTGTTACCATTGTACTGACCACCTCACACACTGGGCCTTTTTGAAGAGAGAAGAGCATGTATCTGTGTTTACTTTGTGGAGGACTTGACAGAGCACTCTACAGTCCATTTGTAGGTAGGTAGTTGTGATGTAGTGTACATTGGATGAAAAATTGGTTAAAATGCATACTTGTAATGAAAAGAATGACAAGTAAATCAGTATAAAACTAACAATATGCTCAAGTGCTATTCAATGATTAATTTGTCTGTTTTATGAAGTAAGTAGCCTGGGATGCTAGATCTGTGTTTGTCTATTCCTCTATCAATAGCCAATGCAGAAACCAATCTGTCAACCAGGCTGTGAAATATGATTGTCTAACAGTGTAATTTGATGAATGTAAGACAACTCCAGCTATTGTTGGGGAGGATGTGCTGCTGTTTATTGATGAATGCTGTTGGAAGTGAATGACTGAAGTTGCCTCATGTCAACAGTGTTTACCTTCCCCAGAACATGGTTTCACATGGCTCTGTCACTGGATGCGTACTTATGATTTATTGCCTTGGTCCTCATTACTCATCATGACATGTGAAAGTGGCAATAAAAACCTTCAAAAGGA
>XM_021562030.2
ACATCATCAATTTATTTGACATAAATGGCGGCCGAAGGCGAATATGAGTCAATCCTGTGCGTTAAACCCGACATCAATGTTTATCGCATACCACCGAGGGCTACAAATCGTGGATACAGACTGGAAGCTGGATGTGCCCGATTGGTCAGGGCGCATGCGGATCACGGCGAAGGGCAAAGTGGCCTACATCAAACTGGAAGACAAGGTCTCAGGGGAGCTGTTCGCCCAAGCCCCTGTCACAGAGTATCCCGGCATCGCAGTTGAAACCGTAAGCGACTCCAGTCGCTACTTTGTCCTGCGAATACAGGATGGCAATGGCCGCAGTGCGTTCATTGGTGTTGGATTCGGGgacagaggggactcttttgacTTCAACGTGTCTTTGCAGGACCACTTTAAGTGGGTGAAACAAGAGAATGAGATCAGCAAAAACCCTCAGGGGGCAGCTTCGGGACCAAAGCTGGACTTGGGATTTAAAGAAGGACAAACCATCACCCTTAATATTGGGCAAGGCAAAAAAAGAGATAAGCCACGCTCACAGGGGGCAGGTGGGTCTGTTCTCCTTCCACCGCCACCAAAAGGCAAGAtggctcctcctccttcctctaccTTCTCCAATCACAACACAGTGCCTCAAACAGGAGGCCCAGAGATCGgcTGTTTGCTAGATCTGGACAGTAGTAACTCCAACACTGTGGTCCAATCATCTAATCCCAGCACTGCTCTTTGGGGAGACTTCTCCACTCCTGCAAGTTCTCTCCCCCCAACATCGCGACAACAGCACACTCTGAATTGGGGCCAGTTTTGAGTCCACGTCACggcatgtttttttatttgattcCATCGCTGAACGCACCGCCTCCCTCTGTCACTACAATACAACAGAAAACTGTCCAAGAGGCAAGGAACACCATGCACTTCTAGAATGTCTttatcaaaactatgaatgaGTGTAGGCTatagtctccccccccccccccccaaagtaaaaaaaataataatgaagtCATATTTTGGATAATAATGCAAATCTATTGCACATATTCAATGTTTTGGCATATGAGATTTATGGTAGGTCTTCAATACCGCCTAAGGGCTATGATGATAGGATCTTCAATTTCTTGTTATCACAGGAATAGGAGCAATATTACAGTACTGCTTTTTACCCAGAAACAGTGCCCTCTTGTTAATGTTTACCTAATCATCACGACATGCTTGATTTATAGAGGGCAACCCATAGGGAGACGTCCTTTCCCATATGGTTTTCTTCTGATCATAATAGGGAAAAGGATTTGTAGTAATTAATTGCTAGGACAGTAGCTCAATTccgttttctcctctctcctcctctgtgcatttgttttctccccctcaaggatttaaaagcattggattagTATATGCATTGGCCTGAGGGAATCTACCATATTCCTTATGATTGCACACAAACTGTAGGCGCTTTTTGGGAGAACGGGGAGAAACGGAGTAGAGCTCATATTGATGAATGTATCTGTTACCATTGTACTGACCACCTCACACACTGGGCCTTTTTGAAGAGAGAAGAGCATGTATCTGTGTTTACTTTGTGGAGGACTTGACAGAGCACTCTACAGTCCATTTGTAGGTAGGTAGTTGTGATGTAGTGTACATTGGATGAAAAATTGGTTAAAATGCATACTTGTAATGAAAAGAATGACAAGTAAATCAGTATAAAACTAACAATATGCTCAAGTGCTATTCAATGATTAATTTGTCTGTTTTATGAAGTAAGTAGCCTGGGATGCTAGATCTGTGTTTGTCTATTCCTCTATCAATAGCCAATGCAGAAACCAATCTGTCAACCAGGCTGTGAAATATGATTGTCTAACAGTGTAATTTGATGAATGTAAGACAACTCCAGCTATTGTTGGGGAGGATGTGCTGCTGTTTATTGATGAATGCTGTTGGAAGTGAATGACTGAAGTTGCCTCATGTCAACAGTGTTTACCTTCCCCAGAACATGGTTTCACATGGCTCTGTCACTGGATGCGTACTTATGATTTATTGCCTTGGTCCTCATTACTCATCATGACATGTGAAAGTGGCAATAAAAACCTTCAAAAGGA

Function

NR:

description
adaptin ear-binding coat-associated protein 1-like isoform X2

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562029.2 False 2232 mRNA 0.45 8 34888886 34894719
XM_021562030.2 True 2105 mRNA 0.44 8 34889005 34894719

Neighbor

gene id symbol gene type direction distance location
LOC110489308 LOC106570000 coding upstream 321261 34522254 ~ 34567625 (+)
LOC110489290 LOC106569995 coding upstream 426390 34444152 ~ 34462496 (+)
LOC110489288 f131b coding upstream 493477 34374118 ~ 34395409 (+)
LOC110489266 LOC106569989 coding upstream 602640 34273307 ~ 34286246 (+)
LOC110487599 LOC106569987 coding upstream 657033 34206176 ~ 34231853 (+)
LOC110489298 LOC106570012 coding downstream 43376 34938095 ~ 34941903 (+)
LOC110489330 LOC104962755 coding downstream 66018 34960737 ~ 34966594 (+)
LOC110489302 LOC106570022 coding downstream 74350 34969069 ~ 34972560 (+)
LOC110489317 LOC106570014 coding downstream 87011 34981730 ~ 34988181 (+)
LOC110489267 LOC106570013 coding downstream 93754 34988473 ~ 35013678 (+)
G2321650 NA non-coding upstream 59339 34829263 ~ 34829547 (+)
G2321638 NA non-coding upstream 79894 34808705 ~ 34808992 (+)
G2321632 NA non-coding upstream 95937 34789371 ~ 34792949 (+)
G2321625 NA non-coding upstream 108978 34772718 ~ 34779908 (+)
G2321615 NA non-coding upstream 142409 34741587 ~ 34746477 (+)
G2321804 NA non-coding downstream 84864 34979583 ~ 34979802 (+)
G2321788 NA non-coding downstream 86306 34981025 ~ 34981617 (+)
G2321899 NA non-coding downstream 233277 35127996 ~ 35174180 (+)
G2321904 NA non-coding downstream 242286 35137005 ~ 35138542 (+)
G2321656 LOC105025880 other upstream 38495 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 549689 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1437266 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1718769 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1945494 32942203 ~ 32943392 (+)
LOC110487604 LOC106570016 other downstream 378420 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 546315 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 596412 35491131 ~ 35498127 (+)
G2321721 LOC106588478 other downstream 691868 35586587 ~ 35594913 (+)

Expression


Co-expression Network