LOC110489298 (LOC106570012)


Basic Information

Item Value
gene id LOC110489298
gene name LOC106570012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34938095 ~ 34941903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562007.2
gagagagagagagagagagagagagaggggaagttcATAGAACTCATGTCTTTTCTGTGGCCACCCAAGTGGGTTTTGAGCCCACATCCTTTAGACTCGCTCGCACAGACACACTGATGCAAACAGAGAGGACAAAGACGACAGTGAGGATTGTATtgacacagagacacaactatctgcacagacacacagcatagaACTATGCACCTCCACACTCCGTTGAACAATTGAAGCTGAAGTACTGGTCAGCTACTACTGGAGCATCTCAACTCATAGCATGACATCCAACGCCACGCTTCCATTCGTCCTCCTTGCCTCAGCCGGCCGAGATGACAAAGCCACTGTGGTGGACCTTGACGCCATCATGGACAACTTCATCATTGTCCTCTACACGCTGACCATTGTCCTGGGCACCACGGGCAACTCTGTGGTCATCTGGGTGGCGGGCTTCAAGCTCAAGCCCACCGTCACCAACGTGTGGCTGGTCAACCTGGCCGTGGCCGACCTCATCTTCTGCCTGAGCCGTGTGCTCTCGCTGACCAAGAAGCTCTTCTTTGACTACTGGCCGTTCGGCATCTTCCTGTGTAAGTTCAATGGCTTCTTCAAGTACACCAACATGTTCTGCAGCGTGTTCCTGCTCGCCATCATCAGCATGGACCGGGCACTGTGCGTCTGGCACCCCGTCTTCACCAAACGCCGCCGGACACTCTGCGCCGCCCGCCTGATGAGCACCGGCGTGTGGGCGGTGGCGGCCATTTTGAGCGCCCCCTACTTTGCCTACCGCCAGGTCTACCTGGGCAAGAACAACCTGAGCAAGTGCTCACTGGAGGTCAAGGAGCCAATGGAAGGCGACAACAGCGCTAAGCTAGCGCTCTACTCCATCCGCTTCCTATGTGGTTTCCTGCTTCCTTTTCTCATCATCCTCTGCTGCTACGTCCTGGCAGGGCTGGGCATCCGACGCACCCGCCTGTTGGGCAAGTCGCGTCCCCTTCGTATCCTGGCATCGCTGGTCTGTGCCTTCTTCCTTTGCTGGGCACCCTACCACTGCCTTCTACTGGCCAAAATGATGTACAGCAAGAATACCATGGTGAAGGTGGGGCTGACAGTGGCCAAAGGCTTTGCTTACTTCAACAGTTGTGTGAACCCGCTGCTGTACTTCTGTATGGGGTTGGACATGAGGGGTTCAAGGTTCAGGCAGAGCTTAGCGGGGGTGTACCAGAGAGCACTAGCCGATGACAGGGATGGTCGGTCCACGCAGTCCAACGAGCGCACAGTGGATGATAGTTCTGGCCCTGCGTCACGACCTGTAATGGTGACCGGTCAGTCTCGAGTGAATGTGGCCAACTTCTGAGGGAAGTCACATATGGTATGAGGAGGGGTTTCAGTCCTTATTAATTTACAGGCTAGTTAACACTGAATAGCTGAATAGCTTGTGTGATCAGTTGTTCAAACCGTTCACATTCCATTGACTTTGTTGTAGCTAGCTAGGAGAGGCGGAAGctagaccacaggggatacataGAGACTGTGAATTTATGTAAATGACTGAATAAATAATTCTCACAGTT

Function

NR:

description
fMet-Leu-Phe receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562007.2 True 1568 mRNA 0.53 2 34938095 34941903

Neighbor

gene id symbol gene type direction distance location
LOC110489311 LOC106570010 coding upstream 43376 34888886 ~ 34894719 (+)
LOC110489308 LOC106570000 coding upstream 370470 34522254 ~ 34567625 (+)
LOC110489290 LOC106569995 coding upstream 475599 34444152 ~ 34462496 (+)
LOC110489288 f131b coding upstream 542686 34374118 ~ 34395409 (+)
LOC110489266 LOC106569989 coding upstream 651849 34273307 ~ 34286246 (+)
LOC110489330 LOC104962755 coding downstream 18834 34960737 ~ 34966594 (+)
LOC110489302 LOC106570022 coding downstream 27166 34969069 ~ 34972560 (+)
LOC110489317 LOC106570014 coding downstream 39827 34981730 ~ 34988181 (+)
LOC110489267 LOC106570013 coding downstream 46570 34988473 ~ 35013678 (+)
ndus5 ndus5 coding downstream 76558 35018461 ~ 35024127 (+)
G2321650 NA non-coding upstream 108548 34829263 ~ 34829547 (+)
G2321638 NA non-coding upstream 129103 34808705 ~ 34808992 (+)
G2321632 NA non-coding upstream 145146 34789371 ~ 34792949 (+)
G2321625 NA non-coding upstream 158187 34772718 ~ 34779908 (+)
G2321615 NA non-coding upstream 191618 34741587 ~ 34746477 (+)
G2321804 NA non-coding downstream 37680 34979583 ~ 34979802 (+)
G2321788 NA non-coding downstream 39122 34981025 ~ 34981617 (+)
G2321899 NA non-coding downstream 186093 35127996 ~ 35174180 (+)
G2321904 NA non-coding downstream 195102 35137005 ~ 35138542 (+)
G2321656 LOC105025880 other upstream 87704 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 598898 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1486475 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1767978 33166851 ~ 33175323 (+)
G2319921 NA other upstream 1994703 32942203 ~ 32943392 (+)
LOC110487604 LOC106570016 other downstream 331236 35025996 ~ 35277684 (+)
LOC110489253 LOC106597474 other downstream 499131 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 549228 35491131 ~ 35498127 (+)
G2321721 LOC106588478 other downstream 644684 35586587 ~ 35594913 (+)

Expression


Co-expression Network