LOC110489330 (LOC104962755)


Basic Information

Item Value
gene id LOC110489330
gene name LOC104962755
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34960737 ~ 34966594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562058.2
tggcggtaatgcaccataacgttggatgccaaccAGCGATAAACCTcaccgaagaagaagaagaagaagaaggagaagggcGAAGCAACGCGAAGGTAGGCCATGGCTCGCGGTCAACAGAAGATTCAATCCCAGCAAAAGAACGCCAAGGCTGCAGCTGCTAAGAAGAAGGGAGCGGCAGCAGACCAGAAGACTGCAGCCAAGGCAGCACTGGTCCACACCTGTCCCGTCTGTCGGACGCAGATGCCGGACCCGAAGACGTTCAAGCAGCACTTTGAGAGCAAGCATCCCAAATCCCCAATGCCCCCAGAGCTGGATGATGTTGAGGCTTAAAAGACCAACACACACAATGGACCTACAGCTGGaCACACGATGACCACGATTAGAGCGCTGCAACTGGAACTTAATGGCGTCAAGAGACAAAATACTGAGACCCCTGGACATGGGTGGGGGATATTTGTGACAATGACATAAAAAGGGGGGCAGAAGCACACCAGCACCCCATATTATATGTCCAACCATCCCTGAACTTCAGACTCTTTTGAAGCGCCCATCTTAATTATATGAGCCCACTCTACCTACATCCCTTTTCCCCATGCTGCTTCCTTCATTAATACCTGATTCAGTAACATCTAGACTGTTACACGTCTAAAAGTATCAGGGTGTTACTGtttttgcaactttttctcaGTTGTGTACCACTGTCTTACTTTAACCACCAACTCTTTTCTATACCTCCTCCCATACACTCTTGTGCAAATCATTTCTGCTTTCTTTGAGAATGGTGTCATAGTGGAAAGGATTTGTTATTTGCCTAAGACAGAGTCTTGTTCTGCCTGTAAAAGGCCCTGGTTGAAATAGTGCCAAAATCACTGTGGATAGTCACCTGGTCCACGTTGTAACAGTTGTATTTTGCATTTGACCATTTCCAAGAAATGTAGCAATATATATGAAATCATTCCTCTGCCTATTTGATCCATTCTGAAGGAAATCAGTGAATAtgttttgtgtgtgagagagaatatgTATGCCTTGTAAATCTAGCAGAAAATGTGTTGCTTCCAAATGCAAGTTAAACGCCATTCCGTCTATACTGATACCAGACAAATGCATACTTACaagtattttcaaatgtatttccaaTATACTGGAATGCTATGTAGCTGGAGAGGGGTTGGAGTTTCTGGAGGTCTGTGTTCACTGGCAATTCCTCTCACTTCTGCATCAAATCAACCTCTACAATATATATTTTACTTATTTTATTACAAATATAGCAGTACACAGTCCTCCATAAATATATTGACAATGACACATTCCTGTGTATTGGATCCTCTGTACATAGAAAATCTGCAAACAAATAGGAATGACATTTGCCATTGCTACTAACTTGTACTTGTTCAAAGTATAAttaaagaaatgtaaaaaaaaaaaatgtaatttgtcacGCACTTATGGTCCATATTTTTTGAGTTTTAATTGAACCATGTGTAGTACATCTAAAAGAGACAATGAGAAATTCTTGGTTCAACAAGACAACAGTCATCAAAAGGGTAGAAATGTAGCGTTGCACATGTCAGAGTACTTTACAGCTTTGATTGGATCCATATAATATATGACAAAGGGTGATGTAATTATCTGAATTACTGTAGATGTGAATAGTTTAAGAGTGAAGTATGGTTATAAGTCGAATGCGAAGATCCGTCGTTATGAAAGAGGTAATGGGTGTTATTCATATGCCATTCTCACACTCAATATCAatatattatactgaacaaaaatgtaaacaccacatataaagtgttggtcccatgtttcatgaactgaaataaaagatcccagaaaagtt
>XR_002468550.2
tggcggtaatgcaccataacgttggatgccaaccAGCGATAAACCTcaccgaagaagaagaagaagaagaaggagaagggcGAAGCAACGCGAAGGTAGGCCATGGCTCGCGGTCAACAGAAGATTCAATCCCAGCAAAAGAACGCCAAGGCTGCAGCTGCTAAGAAGAAGGGAGCGGCAGCAGACCAGAAGACTGCAGCCAAGGCAGCACTGGTCCACACCTGTCCCGTCTGTCGGACGCAGATGCCGGACCCGAAGACGTTCAAGCAGCACTTTGAGAGCAAGCATCCCAAATCCCCAATGCCCCCAGAGCTGGATGATGTTGAGGCTTAAAAGACCAACACACACAATGGACCTACAGCTGGGTTAAGATGCTCTCATCATTCAGACTCCCAGTTTACATaCACACGATGACCACGATTAGAGCGCTGCAACTGGAACTTAATGGCGTCAAGAGACAAAATACTGAGACCCCTGGACATGGGTGGGGGATATTTGTGACAATGACATAAAAAGGGGGGCAGAAGCACACCAGCACCCCATATTATATGTCCAACCATCCCTGAACTTCAGACTCTTTTGAAGCGCCCATCTTAATTATATGAGCCCACTCTACCTACATCCCTTTTCCCCATGCTGCTTCCTTCATTAATACCTGATTCAGTAACATCTAGACTGTTACACGTCTAAAAGTATCAGGGTGTTACTGtttttgcaactttttctcaGTTGTGTACCACTGTCTTACTTTAACCACCAACTCTTTTCTATACCTCCTCCCATACACTCTTGTGCAAATCATTTCTGCTTTCTTTGAGAATGGTGTCATAGTGGAAAGGATTTGTTATTTGCCTAAGACAGAGTCTTGTTCTGCCTGTAAAAGGCCCTGGTTGAAATAGTGCCAAAATCACTGTGGATAGTCACCTGGTCCACGTTGTAACAGTTGTATTTTGCATTTGACCATTTCCAAGAAATGTAGCAATATATATGAAATCATTCCTCTGCCTATTTGATCCATTCTGAAGGAAATCAGTGAATAtgttttgtgtgtgagagagaatatgTATGCCTTGTAAATCTAGCAGAAAATGTGTTGCTTCCAAATGCAAGTTAAACGCCATTCCGTCTATACTGATACCAGACAAATGCATACTTACaagtattttcaaatgtatttccaaTATACTGGAATGCTATGTAGCTGGAGAGGGGTTGGAGTTTCTGGAGGTCTGTGTTCACTGGCAATTCCTCTCACTTCTGCATCAAATCAACCTCTACAATATATATTTTACTTATTTTATTACAAATATAGCAGTACACAGTCCTCCATAAATATATTGACAATGACACATTCCTGTGTATTGGATCCTCTGTACATAGAAAATCTGCAAACAAATAGGAATGACATTTGCCATTGCTACTAACTTGTACTTGTTCAAAGTATAAttaaagaaatgtaaaaaaaaaaaatgtaatttgtcacGCACTTATGGTCCATATTTTTTGAGTTTTAATTGAACCATGTGTAGTACATCTAAAAGAGACAATGAGAAATTCTTGGTTCAACAAGACAACAGTCATCAAAAGGGTAGAAATGTAGCGTTGCACATGTCAGAGTACTTTACAGCTTTGATTGGATCCATATAATATATGACAAAGGGTGATGTAATTATCTGAATTACTGTAGATGTGAATAGTTTAAGAGTGAAGTATGGTTATAAGTCGAATGCGAAGATCCGTCGTTATGAAAGAGGTAATGGGTGTTATTCATATGCCATTCTCACACTCAATATCAatatattatactgaacaaaaatgtaaacaccacatataaagtgttggtcccatgtttcatgaactgaaataaaagatcccagaaaagtt
>TU2655419
gaagaagaagaagaagaagaaggagaagggcGAAGCAACGCGAAGGTAGGCCATGGCTCGCGGTCAACAGAAGATTCAATCCCAGCAAAAGAACGCCAAGGCTGCAGCTGCTAAGAAGAAGGGAGCGGCAGCAGACCAGAAGACTGCAGCCAAGGCAGCACTGGTCCACACCTGTCCCGTCTGTCGGACGCAGATGCCGGACCCGAAGACGTTCAAGCAGCACTTTGAGAGCAAGCATCCCAAATCCCCAATGCCCCCAGAGCTGGATGATGTTGAGGCTTAAAAGACCAACACACACAATGGACCTACAGCTGGaCACACGATGACCACGATTAGAGCGCTGCAACTGGAACTTAATGGCGTCAAGAGACAAAATACTGAGACCCCTGGACATGGGTGGGGGATATTTGTGACAATGACATAAAAAGGGGGGCAGAAGCACACCAGCACCCCATATTATATGTCCAACCATCCCTGAACTTCAGACTCTTTTGAAGCGCCCATCTTAATTATATGAGCCCACTCTACCTACATCCCTTTTCCCCATGCTGCTTCCTTCATTAATACCTGATTCAGTAACATCTAGACTGTTACACGTCTAAAAGTATCAGGGTGTTACTGtttttgcaactttttctcaGTTGTGTACCACTGTCTTACTTTAACCACCAACTCTTTTCTATACCTCCTCCCATACACTCTTGTGCAAATCATTTCTGCTTTCTTTGAGAATGGTGTCATAGTGGAAAGGATTTGTTATTTGCCTAAGACAGAGTCTTGTTCTGCCTGTAAAAGGCCCTGGTTGAAATAGTGCCAAAATCACTGTGGATAGTCACCTGGTCCACGTTGTAACAGTTGTATTTTGCATTTGACCATTTCCAAGAAATGTAGCAATATATATGAAATCATTCCTCTGCCTATTTGATCCATTCTGAAGGAAATCAGTGAATAtgttttgtgtgtgagagagaatatgTATGCCTTGTAAATCTAGCAGAAAATGTGTTGCTTCCAAATGCAAGTTAAACGCCATTCCGTCTATACTGATACCAGACAAATGCATACTTACaagtattttcaaatgtatttccaaTATACTGGAATGCTATGTAGCTGGAGAGGGGTTGGAGTTTCTGGAGGTCTGTGTTCACTGGCAATTCCTCTCACTTCTGCATCAAATCAACCTCTACAATATATATTTTACTTATTTTATTACAAATATAGCAGTACACAGTCCTCCATAAATATATTGACAATGACACATTCCTGTGTATTGGATCCTCTGTACATAGAAAATCTGCAAACAAATAGGAATGACATTTGCCATTGCTACTAACTTGTACTTGTTCAAAGTATAAttaaagaaatgtaaaaaaaaaaaatgtaatttgtcacGCACTTATGGTCCATATTTTTTGAGTTTTAATTGAACCATGTGTAGTACATCTAAAAGAGACAATGAGAAATTCTTGGTTCAACAAGACAACAGTCATCAAAAGGGTAGAAATGTAGCGTTGCACATGTCAGAGTACTTTACAGCTTTGATTGGATCCATATAATATATGACAAAGGGTGATGTAATTATCTGAATTACTGTAGATGTGAATAGTTTAAGAGTGAAGTATGGTTATAAGTCGAATGCGAAGATCCGTCGTTATGAAAGAGGTAATGGGTGTTATTCATATGCCATTCTCACACTCAATATCAatatattatactgaacaaaaatgtaaacaccacatataaagtgttggtcc

Function

NR:

description
Zinc finger protein 706

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562058.2 False 1846 mRNA 0.40 4 34960737 34966594
XR_002468550.2 False 1884 mRNA 0.40 4 34960737 34966594
TU2655419 True 1757 lncRNA 0.40 4 34960787 34966555

Neighbor

gene id symbol gene type direction distance location
LOC110489298 LOC106570012 coding upstream 18834 34938095 ~ 34941903 (+)
LOC110489311 LOC106570010 coding upstream 66018 34888886 ~ 34894719 (+)
LOC110489308 LOC106570000 coding upstream 393112 34522254 ~ 34567625 (+)
LOC110489290 LOC106569995 coding upstream 498241 34444152 ~ 34462496 (+)
LOC110489288 f131b coding upstream 565328 34374118 ~ 34395409 (+)
LOC110489302 LOC106570022 coding downstream 2475 34969069 ~ 34972560 (+)
LOC110489317 LOC106570014 coding downstream 15136 34981730 ~ 34988181 (+)
LOC110489267 LOC106570013 coding downstream 21879 34988473 ~ 35013678 (+)
ndus5 ndus5 coding downstream 51867 35018461 ~ 35024127 (+)
LOC110487604 LOC106570016 coding downstream 59402 35025996 ~ 35277684 (+)
G2321650 NA non-coding upstream 131190 34829263 ~ 34829547 (+)
G2321638 NA non-coding upstream 151745 34808705 ~ 34808992 (+)
G2321632 NA non-coding upstream 167788 34789371 ~ 34792949 (+)
G2321625 NA non-coding upstream 180829 34772718 ~ 34779908 (+)
G2321615 NA non-coding upstream 214260 34741587 ~ 34746477 (+)
G2321804 NA non-coding downstream 12989 34979583 ~ 34979802 (+)
G2321788 NA non-coding downstream 14431 34981025 ~ 34981617 (+)
G2321899 NA non-coding downstream 161402 35127996 ~ 35174180 (+)
G2321904 NA non-coding downstream 170411 35137005 ~ 35138542 (+)
G2321931 NA non-coding downstream 247320 35213914 ~ 35214527 (+)
G2321656 LOC105025880 other upstream 110346 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 621540 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1509117 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1790620 33166851 ~ 33175323 (+)
G2319921 NA other upstream 2017345 32942203 ~ 32943392 (+)
LOC110489253 LOC106597474 other downstream 474440 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 524537 35491131 ~ 35498127 (+)
G2321721 LOC106588478 other downstream 619993 35586587 ~ 35594913 (+)

Expression


Co-expression Network