LOC110489302 (LOC106570022)


Basic Information

Item Value
gene id LOC110489302
gene name LOC106570022
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34969069 ~ 34972560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971690.1
GGAATTAGAATGATGACCAGGAATTGTATAGGATTCTAATGGTAACCATAGAGTTCCAAACTCATTTCTATGGCAACACAGCTGTCAATTTTGTaaacaacaatttcaaatatatgTGTTGCCATGAGACATCTAACCGTTAGAACATATCGGCGTTCTATTGAACGTTTTCTGTTCGAAAACAAGAACAACTTCAATTTgctgttcaacaacaacaaatttgACTGATTTTTGAGACCTGAGATTGAAACATCGACTGGAAAATGCCTGCGTGCTTTTCAAGATTGACGGAGAGAGTGCGAGGACGTCGGCAGCCTTCTGCGTCGACAGGTTGTTCAAATTCATTTATGGGTTGTTTTTGTTGTCTTTTTCCGTTTTGCAGGGTTCGCGATCGTCGGGAGGTGGACAGCGACTTCGAAGAGGAATCAACTGTACTGGATGAGGTCCAGTTGGATGTGCCACTGCTGCCAGTTATCCTTCATGTCCAGGATGCTGCTATCATCCTTGAGGAGGCCACTGGAAATTGGCAGCTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGGAACAATGCCAGTCTGGTGGCTAAAGCCTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTACATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGATGCACCATGTGAGTAGGGTTCGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAAGGAGACAGCCAGGCTTAGTCCAGAGGGCATCCCCTACTGTGCCACCAAGGTGCAGTCCGTCACTTGGATCCAGtatgTGGCTGGCAGGGTGACCCAGTATGCGTCTCACCTCCGCCACGAAATGTCTGTGGACGTGACGTTTGGCTGCTACCAGACTGATGTCTCGGTGGTGTACGCCACTCTCCACATGGGGCTGGATGGGCTGCTCTCCTCCTCGGCATGGTCGGAGGCTGCCTCCGTCTCTACGCCCACCAATCAGCAGTTCACTGAGCCAGAGCCTGAAGGCCACAACTGCTATGAGGGCTGGGAGGAGGACCTGCTGCCTGAGGAGAGGGAGGTCCCTCTGCTAAAccTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTACACTGCTTGGTTCCACCCTGAGCAGGAACCATCTGTTTGTGGCAGGAAAGGTCCTAATGGGCGCACTGGTTCAGGCCCACCACATGGACGAGGCCGAATTCATCCGTGCCTATAATGACTTTGTGGACTACCTGAGTGACCCCTCGAAGGTGATTGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATGTTAACCTGTTAGATGTCCTCTTTGAACTGGTGCTGTTTGGGTTGATGACAACTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCATGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCGCTGCTGCCAGCATTGAGCCAAAGGCTGAGAGATACCTGCTGCTGCTCAATGGCGGGCTGATGGCTCTGCTTGATGACATGTTTGGGCAGCAGCTGGCCTGGTACtttaacccagaatctctggtcaCTGAGCTCTCCAGCCTCCTGGAGTACCACCTGGAGAACCTCATGGCCAGCATGTAGTCCTACTGCAGAGATCTGAAaggccactctctctctgtctgtccatctctctctctctctgtccgtccatccatctctctctctctctccatccatatctctctctctgtccatctctctttctctctctcaggattTGAGGACTTGAAGTGCTTTGTTGAACCTTGATTAGTTAACACAAATTAAATTAATGTattctcttgttttctctccccACAGGATTCTTGTGACACTTTGCCACCTAACAGGGATCTAGACACTAATGCACTACATTACTTTGCACtgaattttacatttttaaataaaataactgGTAGTTT
>TU2655502
ctTGTCGTTTCTCTCCACAGCAGGTGGTGGTGAGGATGCACCATGTGAGTAGGGTTCGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAAGGAGACAGCCAGGCTTAGTCCAGAGGGCATCCCCTACTGTGCCACCAAGGTGCAGTCCGTCACTTGGATCCAGtatgTGGCTGGCAGGGTGACCCAGTATGCGTCTCACCTCCGCCACGAAATGTCTGTGGACGTGACGTTTGGCTGCTACCAGGTAAATAAACATTTTCCTATGTATATAGAATACCAATTACTGTGCATTTTTCCATTAGATATGCTCTGT

Function

NR:

description
uncharacterized protein LOC110489302 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971690.1 False 1984 mRNA 0.50 14 34969069 34972560
TU2655502 True 317 TUCP 0.51 2 34970221 34970626

Neighbor

gene id symbol gene type direction distance location
LOC110489330 LOC104962755 coding upstream 2475 34960737 ~ 34966594 (+)
LOC110489298 LOC106570012 coding upstream 27166 34938095 ~ 34941903 (+)
LOC110489311 LOC106570010 coding upstream 74350 34888886 ~ 34894719 (+)
LOC110489308 LOC106570000 coding upstream 401444 34522254 ~ 34567625 (+)
LOC110489290 LOC106569995 coding upstream 506573 34444152 ~ 34462496 (+)
LOC110489317 LOC106570014 coding downstream 9170 34981730 ~ 34988181 (+)
LOC110489267 LOC106570013 coding downstream 15913 34988473 ~ 35013678 (+)
ndus5 ndus5 coding downstream 45901 35018461 ~ 35024127 (+)
LOC110487604 LOC106570016 coding downstream 53436 35025996 ~ 35277684 (+)
LOC110489282 LOC106588459 coding downstream 309028 35281588 ~ 35302970 (+)
G2321650 NA non-coding upstream 139522 34829263 ~ 34829547 (+)
G2321638 NA non-coding upstream 160077 34808705 ~ 34808992 (+)
G2321632 NA non-coding upstream 176120 34789371 ~ 34792949 (+)
G2321625 NA non-coding upstream 189161 34772718 ~ 34779908 (+)
G2321804 NA non-coding downstream 7023 34979583 ~ 34979802 (+)
G2321788 NA non-coding downstream 8465 34981025 ~ 34981617 (+)
G2321899 NA non-coding downstream 155436 35127996 ~ 35174180 (+)
G2321904 NA non-coding downstream 164445 35137005 ~ 35138542 (+)
G2321931 NA non-coding downstream 241354 35213914 ~ 35214527 (+)
G2321656 LOC105025880 other upstream 118678 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 629872 34337110 ~ 34354024 (+)
G2320160 NA other upstream 1517449 33451159 ~ 33451620 (+)
LOC110487593 LOC106570137 other upstream 1798952 33166851 ~ 33175323 (+)
G2319921 NA other upstream 2025677 32942203 ~ 32943392 (+)
LOC110489253 LOC106597474 other downstream 468474 35441034 ~ 35521453 (+)
G2321738 LOC106597474 other downstream 518571 35491131 ~ 35498127 (+)
G2321721 LOC106588478 other downstream 614027 35586587 ~ 35594913 (+)
LOC110511601 LOC106570043 other downstream 1320218 36285727 ~ 36298893 (+)

Expression


Co-expression Network