LOC118936453 (LOC106595653)


Basic Information

Item Value
gene id LOC118936453
gene name LOC106595653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35487909 ~ 35492518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971112.1
ATGAGACAAgacgggagagggggaaggttgaAGAACTGGCTATCCAAACTCAAAAACAAAGAGAAGACATGGTGGGTTTTatggaaaagaacaaacaaaagcAGAACGAACTGGAACTCATGAATGAcaagattgaaagagagaaacaagacaTCGAAGACAGTCGGGATGTGCTAACAAAGGAGAGAGTGGAGCTGGAACAAATGAGGAGTGAgatacagcaacagagagaggagacagaatctCACATGGAAGAccaaaggaaagagaaagagcatTTGGAACAAATGACGACGGACATGAAAAAACAGTTGCTAGAGGTGGACAATGACAAGGAAATGATACAAAGTTCAATGGGTGAACTGAGAGTGAAAGAGGCAGAAATGGTGAGAGAAAAAGACAACATGGATAACAAGATGGCTAGGCTCAATGAGGAAGAGGATAGAAAGCGGGAAGAAATAGGAAGGAAAATGGACATCTTAAAGCAGGAAAGTTGTGAAATCACAAGACTTAGAGAtgaaattgacagtgaaaaggacCAGCTGAATGCAAAATTGCTTGAGTTGGAAAAAATGCGTGAAGAACTAGATAGACAGAAGAAGGAAGTGAAAGACAGGAAGGATGAAACACTGAAAGAGAAAGATCAGTTGGAAGAGAGGCGAGGTAAGATAAGTAAGGAGAAAGAGGAATTGGATATCAGTCTTGAACTGATGAAAAGACAAAGGGAAGACTTGACGAGCTTGAAGGCTGAAGCAGAAGTACAGACCGAACCTATGGAAACAGACTGGAAGGAAAAGCTCACGAGGGAAAGACAACAACTTCAAGATGTAAAAGAGGAGATACAGAAGGAAAAAGAAACctttgagagaaagaagggattGACCATGAAAGAAAGAGATGAGTTTGATCTGATGAAGTCTGAAACCCAGGGACAATTGGAGgaaatagaacaaaacaaacaagacattCGTGTGGAGAAGGAAAAGCTGGATCAGATCAAAGCTGAGTTAGAAAGACGGTCTGAAGACATCAATCATGTCATGGATGAGACAAgacgggagagggggaaggttgaAGAACTGGCTATCCAAACTCAAAAACAAAGAGAAGACATGGTGGGTTTTatggaaaagaacaaacaaaagcAGAACGAACTGGAACTCATGAATGAcaagattgaaagagagaaacaagacaTCGAAGACAGTCGGGATGTGCTAACAAAGGAGAGAGTGGAGCTGGAACAAATGAGGAGTGAgatacagcaacagagagaggagacagaatctCACATGGAAGAccaaaggaaagagaaagagcatTTGGAACAAATGACGACGGACATGAAAAAACAGTTGCTAGAGGTGGACAATGACAAGGAAATGATACAAAGCTCAATGGGTGAACTGAGAGTGAAAGAGGCAGAAATGGTGAGAGAAAAAGACAACATGGATAACAAGATGGCTAGGCtcaaagaggaagaggatggaaTGCGGGAAGAAATAGGAAGGAAGATGGACATCTTAAAGCAGGAAAGTTGTGAAATCAAAAGACTTAGAGAtgaaattgacagtgaaaaggacCAGCTGAATGCAAAATTGCTTGAGTTGGAGAAAATGCGTGAAGAactagaaagagagaagaaggaagTGAACAACAGGAAGGATGAAACACTGAAAGAGAAAGATCAGTTGGAAGAGAGGCGAGGTAAGATGAGCAAGGAGAAAGAGGAATTGGATATCAGTCTTGAACTGATGAAAAGACAAGGGGAAGACTTGACGAGCTTGAAGGCTGAAGCAGACGCACAGACCGAGGCTATGGAAACAGACTGGAAGGAAAAGCTCACGATGGAAAGACAACAACTTGAAGATGTAAAGGAGGAGATACAGAAGGAAAAAGAAGCctttgagagaaagaagggattGACCATGAAAGAAAGAGATGAGTTTGATCTGATGAAGTCTGAAACCCAGGGACAATTGGAGgaaatagaacaaaacaaacaagacattCGTGTGGAGAAGGAAAAGCTGGATCAGATCAAAGCTGAGTTAGAAAGACGGTCTGAAGACATCAATCAGCTCATGGATGAGACAAgacgggagagggggaaggttgaAGAACTGGCTATCCAAACTCAAAAACAAAGAGAAGAAATGGTGGGTTTTatggaaaagaacaaacaaaagcAGAACGAACTGGAACTCATGAATGAcaagattgaaagagagaaacaagacaTCGAAGAAAGTTGGGATGTgctaacaaaggagagagaggagctggaacAAATGAGGAGTGAgatacagcaacagagagaggagacagaatctCACATGGAAGAccaaaggaaagagaaagaacatTTGGAACAAATGACGACGGACATGAAAAAACAGTTGCTAAAGGTGGACAATGACAAGGAAATGATACAAAGCTCAATGTGTGAACTGAGAGTGAAAGAGGCAGAAATGGTGAGAGAAAAAGACAACATGGATAACAAGATGGCTAGGCtcaaagaggaagaggatggaaTGCGGGAAGAAATAGGAAGGAAGATGGACATCTTAAAGCAGGAAAGTTGTGAAACCAAAAGACTAAGAGAtgaaattgacagtgaaaaggacCAGCTGAATGCAAAATTGCTTGAGTTGGAAAAAATGCGTGAAGAACTAgatagagagaagaaggaagTGAAAGACAGGAAGGATGAAACACTGAAAGAGAAAGATCAGTTGGAAGAGAGGCGAGGTAAGATAAGTAAGGAGAAAGAGGAATTGGATATCAGTCTTGAACTGATGAAAAGACAAAGGGAAGACTTGACAAGCTTGAAGGCTGAAGCAGAAGTACAGACCGAACCTATGGAAACAGACTGGAAGGAAAAGCTCACGATGGAAAGACAACAACTTGAAGATGTAAAGGAGGAGATACAGAAGGAAAAAGAAGCctttgagagaaagaagggtTTGACCATGAAAGAAAGAGATGAGTTTGATCTGATGAAGTCTGAAACACAGGGACAATTGGAGgaaatagaacaaaacaaacaagacattCGTGTGGAGAAGGAAAAGCTGGATCAGATCAAAGCTGAGTTAGAAAGACGGTCTGAAGACATCAATCAGCTCATGGATGAGACAAgacgggagagggggaaggttgaAGAACTGGCTATCCAAACTCAAAAACAAAGAGAAGAAATGGTGGGTTTTatggaaaagaacaaacaaaagcAGAACGAACTGGAACTCATGAATGAcaagattgaaagagagaaacaagacaTCGAAGACAGTCGGGATGTGCTAACAAAGGAGAGAGTGGAGCTGGAACAAATGAGGAGTGAgatacagcaacagagagaggagacagaatctCACATGGAAGAccaaaggaaagagaaagagcatTTGGAACAAATGACGACGGACATGAAAAAACAGTTGCTAGAGGTGGACAATGACAAGGAAATGATACAAAGCTCAATGGGTGAACTGAGAGTGAAAGAGGCAGAAATGGTGAGAGAAAAAGACAACATGGATAACAAGATGGCTAGGCtcaaagaggaagaggatggaaTGCGGGAAGAAATAGGAAGGAAGATGGACATCTTAAAGCAGGAAAGTTGTGAAATCAAAAGACTTAGAGAtgaaattgacagtgaaaaggacCAGCTGAATGCAAAATTGCTTGAGTTGGAGAAAATGCGTGAAGAactagaaagagagaagaaggaagTGAACAACAGGAAGGATGAAACACTGAAAGAGAAAGATCAGTTGGAAGAGAGGCGAGGTAAGATGAGCAAGGAGAAAGAGGAATTGGATATCAGTCTTGAACTGATGAAAAGACAAAGGGAAGACTTGACAAGCTTGAAGGCTGAAGCAGAAGTACAGACCGAAGCCTATGGAAACAGACTGGAAGGAAAAGCTCACGATGGAAAGACAACAACTTGAAGATGTAAAGGAGGAGATACAGAAGGAAAAAGAAGCctttgagagaaagaagggtTTGACCATGAAAGAAAGAGATGAGTTTGATCTGATGAAGTCTGAAACACAGGGACAATTGGAGgaaatagaacaaaacaaacaagacattCGTGTGGAGAAGGAAAAGCTGGATCAGATCAAAGCTGAGTTAGAAAGACGGTCTGAAGACATCAATCAGCTCATGGATGAGACAAgacgggagagggggaaggttgaAGAACTGGCTATCCAAACTCAAAAACAAAGAGAAGAAATGGTGGGTTTTatggaaaagaacaaacaaaagcAGAACGAACTGGAACTCATGAATGAcaagattgaaagagagaaacaagacaTCGAAGACAGTCGGGATGTgctaacaaaggagagagaggagctggaacAAATGAGGAGTGAGATACAGCAACAAAAGAGGAGACAGAATCTCACATGGAAGAccaaaggaaagagaaagaacatTTGGAACAAATGACGACAGACATGAAAAAACAGTTGCTAGAGGTGGACAATGACAAGGAAATGATACAAAGTTCAATGGGTGAACTGAGAGTGAAAGAGGCAGAAATGGTGAGAGAAAAAGACAACATGGATAACAAGATGGCTAGGCtcaaagag

Function

NR:

description
centromere-associated protein E-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971112.1 True 4610 mRNA 0.41 1 35487909 35492518

Neighbor

gene id symbol gene type direction distance location
LOC110489282 LOC106588459 coding upstream 192711 35281588 ~ 35302970 (+)
LOC110487604 LOC106570016 coding upstream 210225 35025996 ~ 35277684 (+)
ndus5 ndus5 coding upstream 463782 35018461 ~ 35024127 (+)
LOC110489267 LOC106570013 coding upstream 474231 34988473 ~ 35013678 (+)
LOC110489317 LOC106570014 coding upstream 499728 34981730 ~ 34988181 (+)
LOC110489268 LOC106570027 coding downstream 66042 35558560 ~ 35568391 (+)
LOC110489299 LOC106570032 coding downstream 145694 35638212 ~ 35643788 (+)
ncdn ncdn coding downstream 200751 35693269 ~ 35702960 (+)
LOC110489281 LOC106570035 coding downstream 211396 35703914 ~ 35715579 (+)
ago4 LOC106511154 coding downstream 284730 35777248 ~ 35814633 (+)
G2321733 LOC106570021 non-coding upstream 51777 35425707 ~ 35436132 (+)
G2321793 NA non-coding upstream 127756 35359655 ~ 35360153 (+)
G2321762 NA non-coding upstream 141788 35337839 ~ 35346121 (+)
G2321963 NA non-coding upstream 148182 35323963 ~ 35339727 (+)
G2321758 NA non-coding upstream 157090 35321090 ~ 35330819 (+)
G2321777 NA non-coding downstream 42548 35535066 ~ 35535838 (+)
G2321998 NA non-coding downstream 43903 35536421 ~ 35536976 (+)
G2321999 NA non-coding downstream 44627 35537145 ~ 35538895 (+)
G2321748 LOC106570028 non-coding downstream 77276 35569794 ~ 35572138 (+)
G2322019 NA non-coding downstream 79966 35572484 ~ 35572742 (+)
LOC110489302 LOC106570022 other upstream 517283 34969069 ~ 34972560 (+)
G2321656 LOC105025880 other upstream 637518 34849178 ~ 34850391 (+)
G2321378 LOC106569991 other upstream 1148712 34337110 ~ 34354024 (+)
G2320160 NA other upstream 2036289 33451159 ~ 33451620 (+)
G2321721 LOC106588478 other downstream 94069 35586587 ~ 35594913 (+)
LOC110511601 LOC106570043 other downstream 800260 36285727 ~ 36298893 (+)
G2323520 NA other downstream 835886 36328404 ~ 36408978 (+)
G2323704 NA other downstream 1155295 36647813 ~ 36648422 (+)
LOC110488401 LOC106570049 other downstream 1446564 36939068 ~ 37071496 (+)

Expression


Co-expression Network