LOC110489284 (cap1)


Basic Information

Item Value
gene id LOC110489284
gene name cap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35644009 ~ 35654350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561979.2
CGAATAAGGGCGGAAACGCCGCGCGGTGACAGCTGGGAACGGCTACACTCATACAGGAAGAATAGGCAGAGCAGTCAGTCCGCTTGCTCGGCACTCTCCCATAGACTATTGACGGTGATTAAATACCTAATCAGTGCTGCTTGTCCAAGTTAGCAGGAATGGCAGAGTTGGCAAGTCTGGTGCAGCGGCTGGAGGTGGCTGTGAGTCGTCTGGAAGCCGTGTCGGGCGATGGAGGTGGCTCTGCTGGCGGCTCTGGAGTTGTGGCAGCGTACGTGGAGGCCTATGATGCCATCATCACGGGCTCTGTTGGCCAGTACATGACCCTCAGCCAGCAGATAGGGGGCGACGTCCAGAAGCATGCGGACATGATGAAGCAGGCGTTCTCCTGTCAGAGACAGCTCCTGGTCACCTCCTCCTGCTCCCAGAAACCCTCTGATGCATCCTTGACTGCTCTCCTGGCCCCCGTCTCCAAAGTGATCCAGCAGGTGCAGACGTTCCGCGAGCAAAACCGCTCCTCGCCCCTCTTCAACCACCTCTCGGCCGTCAGCGAGAGCGTGCCTGCCCTCGGCTGGGTCGCCATGGCTCCTAAGCCAGGTCcctatgtgaaggagatgcagGATGCTGCCCAGTTCTACACCAACCGGGTTCTCAAGGACTACAAGGAGAAGGACCAGAAGCATGTGGACTGGGTGAAGGCCTACCTGTCTATCTGGACTGAGCTGCAGAACTACGTCAAACAGCACCACACCACCGGACTGGCCTGGAGCAAGAGTGGTCCAGTAGCCTCGGCATCTGCAGCTCCTCCTCCCCGTGCCGGTCCTCCTCCCCCcggacctcctccccctcccatgGCGTCGTCTGGCGGCAGCGGAGACCAGGGACCAGACACCCGAAACGCACTCTTCGCTTCCCTCAACAAGGGAGCTGACGTCACCAAGGGCCTGAAGCACGTGCCCAAAGACCAGATGACTCACAAGAACCCCAACCTGAGGACTCAGACCGGCCCGGTGCGCACAGGGCCCAAGCCCTTCACTACCTCCAAGCCGGCTGTCACCGCCGCCGCCGCCTCTCGCAAGCTGCCCCCCGTTTTGGAGCTTGACGGCAAAAAGTGGAAAGTGGAGAACCAGGAGGGTGTCCAGGGCCTGGTGATCAGCGACACAGAGCTCAAGCAAGTGGTCTACGCCTTCAAGTGTAACAACAGCACCCTGCAGATCAAGGGCAAGATAAACTCCATCACTTTAGACAACTGTAAGAAACTGGGTCTGGTCTTTGACGATGTTGTGGGCATTATCGAGGTTATCAACTGCAGGGACGTCAAGGTCCAGGTCTTGGGCAAGGTGCCCACCATCTCCATCAACAAGACTGACGGTTGCCACGTGTACCTGAGCAAAGATTCGCTGGAGTGTGAGATCGTCAGCGCCAAGAGCTCAGAGATGAACGTGCTGGTACCTGGTAAAGATGGAGACTATACTGAGATCCCTGTTCCTGAGCAGTTCAAGACTGTCTGGGATGGCAAGAAGCTAGTCACCACTTGTACAGAGATCGCTGGATAGAGGGGCAGCCAGCACTCGTAACAGCCTTCCCTTTGCAAATGCCTACCTGACTGATCGACCGACCAACCAGCTAACCAAACCACAAAGTAGACTGAGATGCCAACCTAGCCCAAAATGTTTTCCTATCTGCCAATCACAGCTTTAGCTGTTTCTTCCTTCAGCCAATGAGAGGACTGCTTGCTTTATCTGGAGCGTTCCTTCAGCCAATTGCAGGGAGCAGCTTGTTATTCGATTTGGTTATCCTCATGGCCAGTGAGCGCATTCAAATGAGTTTGCCAACAACCAGGATCATTTCTGATTTGATCTGTACATTCCAGCAAATGATAAAAGCCTTGCTCCCGCTATTATGTTTCACACCTTCTCTGTGGTTTAAACTCCTATGCCAATCAGGCTATGCTTCCTGTTTCCTTCAAGCAATCATTTAATAGGGTTCCCATTTCCCCTCTGGTCGGGGGGGGAgcaggtgttcaggagtctaagGTTTGTTTCATTTATGCAATTCATCCGTGAAGCACATGTACAACCAAGCCCCTCTTTACAGACGACATTAACATTTCATAGGGATTGATTAACTATGATATGTCATCGCTCTTAAATCGGTGAAATGACGAGTTGCGTTGCGTGCAGGTTCACTgtctttaaaaataaataacaatcaaAATGCTGaaaaaatattgaaaaataaaaaagtttagTTCCCAAAACATTCCCTTTAGCATTTTTAAATTAACATTCCATATTATTGAGACATATGGAGGTGAACGGTGGCAAAGAGGGAAGTATGTGGTGAGTGTGACTTCAGCACAAGCTGGAAGTGAGTGGTTCTAGAGATAGACAAgacaaacaagacaagacaaaattcTTGAAGAATCATTATTGGCTAAGTTTGGGGTTACCTCCCTTAAGCTCTGAATGACTGTTGTAATGATCTGTGTAGACATTTCTTTTTAATGCTAGAGTTGTCTTAACTCCACTGTCGCCATCACCTACACATCAACCCACCTAGCCACTCTTGTCTACAACATCCGTGGTTATCCTGTTGTAGCGGTCATACTCTGTGGAGTTTCTTTTGCCTCTATTTGGGTCAAGAATCAACATTTTGCTCATCAGTACTGGAGGAAGACAAATGTTGCAATAAAATAATTATAAGAAA

Function

symbol description
cap1 Predicted to enable actin monomer binding activity and adenylate cyclase binding activity. Acts upstream of or within mesodermal cell migration and somitogenesis. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in adaxial cell; ectoderm; heart; segmental plate; and skeletal muscle. Orthologous to human CAP1 (cyclase associated actin cytoskeleton regulatory protein 1).

NR:

description
adenylyl cyclase-associated protein 1-like

GO:

id name namespace
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0001756 somitogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0003785 actin monomer binding molecular_function

KEGG:

id description
K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561979.2 True 2706 mRNA 0.51 13 35644009 35654350
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Neighbor

gene id symbol gene type direction distance location
LOC110489279 LOC106570030 coding downstream 4874 35625193 ~ 35639135 (-)
LOC100136004 LOC100136485 coding downstream 50424 35590044 ~ 35593585 (-)
LOC110489285 ef1a coding downstream 54169 35585881 ~ 35589840 (-)
LOC110489275 LOC106570029 coding downstream 58479 35579604 ~ 35585530 (-)
LOC110489326 LOC106570028 coding downstream 71818 35569843 ~ 35572191 (-)
LOC110489259 kiaa0319l coding upstream 2625 35656975 ~ 35692878 (-)
psmb2 psmb2 coding upstream 62447 35716797 ~ 35727426 (-)
LOC110489305 cssa14h1orf216 coding upstream 80953 35735303 ~ 35740939 (-)
LOC110489257 clspn coding upstream 98476 35752826 ~ 35776272 (-)
c19h1orf109 ca109 coding upstream 164487 35818837 ~ 35822679 (-)
G2322885 NA non-coding downstream 24814 35618982 ~ 35619195 (-)
G2322881 NA non-coding downstream 29587 35614193 ~ 35614422 (-)
G2322864 NA non-coding downstream 46845 35596942 ~ 35597164 (-)
G2322851 NA non-coding downstream 66093 35573401 ~ 35577916 (-)
G2322551 LOC106595653 non-coding downstream 135442 35502602 ~ 35508567 (-)
G2322872 NA non-coding upstream 640 35654990 ~ 35655462 (-)
G2322898 NA non-coding upstream 32617 35686967 ~ 35687189 (-)
G2322901 NA non-coding upstream 35825 35690175 ~ 35690624 (-)
G2322903 NA non-coding upstream 36907 35691257 ~ 35691585 (-)
G2322904 NA non-coding upstream 37238 35691588 ~ 35691797 (-)
G2322592 NA other downstream 74593 35568749 ~ 35569416 (-)
G2322545 LOC106595184 other downstream 122555 35477914 ~ 35521454 (-)
LOC110489319 LOC106570022 other downstream 289335 35352788 ~ 35356932 (-)
G2322701 LOC106588461 other downstream 451880 35184884 ~ 35192129 (-)
LOC110487602 LOC106570003 other downstream 977058 34662296 ~ 34715706 (-)
G2323152 NA other upstream 156700 35811050 ~ 35814601 (-)
LOC110488406 med30 other upstream 1550249 37204063 ~ 37240288 (-)
si:ch211-153f2.3 LOC104957086 other upstream 1614261 37268611 ~ 37274589 (-)
LOC110517080 tmem42 other upstream 2226589 37880939 ~ 37884444 (-)
G2327199 NA other upstream 3399947 39054297 ~ 39057009 (-)

Expression

LOC110489284(cap1) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 300.
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LOC110489284(cap1) Expression in each Bioproject

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LOC110489284(cap1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
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Co-expression Network