ncdn (ncdn)


Basic Information

Item Value
gene id ncdn
gene name ncdn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35693269 ~ 35702960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561938.2
ttacgaattgacggtttattaaccagactttacacaggctactgtttggccgtagcccacgccaaatGAACGAAAGATACCCCACAAGCCAACCGTGACCTCTTGTGAAGCCCAGACGTAAGAGAGAACAAAggctaaacctggtcttaacttccaatgctccaACCCCCCTCCGCCAACCGCCAGaatgcccggcatcagaacattctaggcattcccgtgattggcagatagcaggttgattagcatgtcggaccccgcgaacactgggtactgCTTGCTTTCGTGGATCTCATTCTCTTGTGCAGCGCTGAAAGTTGAATGAACAAATAAAGAACGCAGCTAGCCTAAATGATGGCATTAGCAATGGCTGAGGGTACATTTATTGTGAGCTCTGAGAGTGATTCCAGTGGCGAACACACAGGcagtgaggaaggagagggagcgcCACTGGCGATAGATGGCTTGTCTGCTGCCCAGCGTGAGGTTCTGGAGCGCTGtctacacacactcacccatGCCAAAAACGACAGCCACACACTCGCTGCACTTCTCCTGATTACACGATTGTGTCCAGCAGGCCAGCTTGACAGTGCGACACTGCGGCGCATCTTTGAGGCGGTGGGGCTGAGTCTTCCAGCTCGCCTGCTGGTGACTGCGGTCCGGGGGAGTGATGCCTCCGGCTTGCCCCCAGAGGAGCTTCTGTCTCTGGGCACAGCTCTGCTGGCTGCcctcagcacagacccagacatgGCCGCCCACCCACAGCTCCTTACCACCATCCCTCTACTGCTAGGGCTGCTGGCCGATGGGCCCAAATGGAGCCCGCAGAAACAAGCCCAGCACCAGGCTAGACAAGGGATGGAACCAGACCAGCCAAGCCAGGCTGAAGATGAACAGTCATCACAGAGCACAAACACTACCAAAGAGCCTGTCCAGGACACTGCAGGATTCAAAGCACCGTCTCCAGATGCGACGAGCCCTACAGGCTCTGAGGAAGGTACTGCAGAAAATGGAGCTCCAACTTCCCATTCAACAGTCAAACTGGATGAGGCCTTGGCTACAGACTGTTACCAGGTTTTGATTACAGTGTGTGCTTTACCCCGGGGCCCAGACCAGCTCCTGGCCAGGGGCGCCGTCCCAGCTCTTTGTCGGGCCTTGGGACAGAAACAGACACTGAGCCATGAAAAAGGACTACCCCTTCTTGGTGCCCTGCTCTCAGGCAAAACTAAAGAGAGAGCCTGGAGTAAGCACCCAGCcgaactcctctctctcctggccaGAGTCTCCCAAGACTTCTGCCAAGCCACTGGCCTCACCCAGCTCGATATGTGTGCCCTGGTGCCGCAGTTCCTCCCCTCGCCAGGTGGAACACCAAAGGACACTGACCTAATGCCAACTATGGTCAGTCTGTGGGTGGCCCTGAGGCCCATGCTGCAGGCTAAGCTGACCCCAGGTCAAATAGGCCCTGTGTTAGTCCTCTCCGCCTGCCTGTTGGACCTGTGCGGCTGGGAGCCTGTGGGGCCACCTAAGTTCTGTTGCCTGCTGGTAAACCGGGCCTGTGTGGAGGTGAGGATGGGCCTGGAGGAGCCCCCCGATACAGAGCTGAGTCCCCAACTGCAACAGACACTCACCGCCTGCTACCGCGTCATGGAAGCGGCCATGGAGCAGGCCTGCAGCAGCCAGGGAGTCGCCCAGCAGAGCGATGCCCAGCCACAGACTGCCATCACTGGACTCAGTCTGCAGCAGAGCAGGCAGGTTCTCCTGGTTCTGGAGGAGGCCTTCTCGGCAGTCATCTATCACCTGCAGCAGGTTGATCCGAGTCGTTACGGCGACCCCTTCATTTTCGCCACGTTCCGCTCCCTCTGCGCCTGGCTCGCTGAAGAGACTTCATGTCTCAAGGAGGAAGTGACTGCCCTCTTGCCCTTTCTGATGGGCTACGCCAGAAGCCATCTGCAGGGAGAGAGTCAGGACCAGGGTCTTTCCAATTGGATGTCGGAGATGTCTGTAGGCGACTGCTCACAGGGAGGGGCTTGGACAGGCAAAGATGCTGTAAGgtATCTCCTCCCAGCTCTGTGCCACCTCTCTGCAGAGGACGCCCCAAGAAAGGTGTTGCTCACCCTGGACACCCCAGGTCTCCTGGTGGCCTTCCTAACCCAGGGATGGGGTGACATGCGGGGGAAAGGAGGGGCAGCGTTAGCCCGGGACCCCAGTATGGAGACAGCCTGCTCGGCCCTGCTCAACTTCACTGTCACGGAGCCGGAGCGAGTCAGAAAGGACCCTTGTTTCAGAAGCCTTGAGTCACTGTTGAGTGAAGCACTTCCTGTTCTCCTGCACAAACCTCGCCTCTTGGTCCTGGCTGCCAATCTTTGTACTCTGGGGCTCATGATTGGCAGGCTTAAACCAGCTCCTAAAGCTCCGGTTGAAGCAAGCCAAAGGCGGTTCTTCTCCGCAGCCCTGCGGTTCCTCCGTGGTGCCCTGGACTCCAGCTCGGGCCCGGGCCCAGTTAGGGTGAGCCCTGCCTGGGAGGAGTGGTGGGAGGAGGCTGGGGAGCTGTGGAGGCTGGGTCTGCAGGCCCTGGGAGGTTGTGTGAAGGCCCAGCCCTGGATCATCACCCTGGTCAGGGAGGAGGGTTGGCTCAACCACACCCTTGCCATGCTGGGCTCCTGTAGCACCCTGCCTGACCCCCACACCCAGGGGGCACTAGAGGAGGCCCTCTGCGCAGTGGCACTCCAGTGCCCGTTCTGTCGACAGGAGATCAGTGTCCTCCTGAAGAGCAGTGCCAAGGGAGCCTTGGGTAGCATGGACAGTCTGAGGAAATCCCTTACCACAAACTGAAGCACTTGTGTATTGATCATGAAGATgggggccaggagtttttcctgagcAGACACGTAACATGATCAGGAAAAACTTCAGCCTCGAGACTAAGACAAACTGGCTGAATATATCATTGTTTAGTAACAGGCTATACTTGCTTTGTCATACGCTTCCTGATAAACATTGCACTTGTTTGTCAGATGGTATGACTGTATATAAGCAGTCTGTTACATGTATGAAAGTtaagaataaaataaataattattttgttAAAGA
>XM_021561939.2
acaaTATAAACCTAAACGCGATTAATCCAATCACGTCCGTCTAACGCAGCCAACTTGCTTTCGTGGATCTCATTCTCTTGTGCAGCGCTGAAAGTTGAATGAACAAATAAAGAACGCAGCTAGCCTAAATGATGGCATTAGCAATGGCTGAGGGTACATTTATTGTGAGCTCTGAGAGTGATTCCAGTGGCGAACACACAGGcagtgaggaaggagagggagcgcCACTGGCGATAGATGGCTTGTCTGCTGCCCAGCGTGAGGTTCTGGAGCGCTGtctacacacactcacccatGCCAAAAACGACAGCCACACACTCGCTGCACTTCTCCTGATTACACGATTGTGTCCAGCAGGCCAGCTTGACAGTGCGACACTGCGGCGCATCTTTGAGGCGGTGGGGCTGAGTCTTCCAGCTCGCCTGCTGGTGACTGCGGTCCGGGGGAGTGATGCCTCCGGCTTGCCCCCAGAGGAGCTTCTGTCTCTGGGCACAGCTCTGCTGGCTGCcctcagcacagacccagacatgGCCGCCCACCCACAGCTCCTTACCACCATCCCTCTACTGCTAGGGCTGCTGGCCGATGGGCCCAAATGGAGCCCGCAGAAACAAGCCCAGCACCAGGCTAGACAAGGGATGGAACCAGACCAGCCAAGCCAGGCTGAAGATGAACAGTCATCACAGAGCACAAACACTACCAAAGAGCCTGTCCAGGACACTGCAGGATTCAAAGCACCGTCTCCAGATGCGACGAGCCCTACAGGCTCTGAGGAAGGTACTGCAGAAAATGGAGCTCCAACTTCCCATTCAACAGTCAAACTGGATGAGGCCTTGGCTACAGACTGTTACCAGGTTTTGATTACAGTGTGTGCTTTACCCCGGGGCCCAGACCAGCTCCTGGCCAGGGGCGCCGTCCCAGCTCTTTGTCGGGCCTTGGGACAGAAACAGACACTGAGCCATGAAAAAGGACTACCCCTTCTTGGTGCCCTGCTCTCAGGCAAAACTAAAGAGAGAGCCTGGAGTAAGCACCCAGCcgaactcctctctctcctggccaGAGTCTCCCAAGACTTCTGCCAAGCCACTGGCCTCACCCAGCTCGATATGTGTGCCCTGGTGCCGCAGTTCCTCCCCTCGCCAGGTGGAACACCAAAGGACACTGACCTAATGCCAACTATGGTCAGTCTGTGGGTGGCCCTGAGGCCCATGCTGCAGGCTAAGCTGACCCCAGGTCAAATAGGCCCTGTGTTAGTCCTCTCCGCCTGCCTGTTGGACCTGTGCGGCTGGGAGCCTGTGGGGCCACCTAAGTTCTGTTGCCTGCTGGTAAACCGGGCCTGTGTGGAGGTGAGGATGGGCCTGGAGGAGCCCCCCGATACAGAGCTGAGTCCCCAACTGCAACAGACACTCACCGCCTGCTACCGCGTCATGGAAGCGGCCATGGAGCAGGCCTGCAGCAGCCAGGGAGTCGCCCAGCAGAGCGATGCCCAGCCACAGACTGCCATCACTGGACTCAGTCTGCAGCAGAGCAGGCAGGTTCTCCTGGTTCTGGAGGAGGCCTTCTCGGCAGTCATCTATCACCTGCAGCAGGTTGATCCGAGTCGTTACGGCGACCCCTTCATTTTCGCCACGTTCCGCTCCCTCTGCGCCTGGCTCGCTGAAGAGACTTCATGTCTCAAGGAGGAAGTGACTGCCCTCTTGCCCTTTCTGATGGGCTACGCCAGAAGCCATCTGCAGGGAGAGAGTCAGGACCAGGGTCTTTCCAATTGGATGTCGGAGATGTCTGTAGGCGACTGCTCACAGGGAGGGGCTTGGACAGGCAAAGATGCTGTAAGgtATCTCCTCCCAGCTCTGTGCCACCTCTCTGCAGAGGACGCCCCAAGAAAGGTGTTGCTCACCCTGGACACCCCAGGTCTCCTGGTGGCCTTCCTAACCCAGGGATGGGGTGACATGCGGGGGAAAGGAGGGGCAGCGTTAGCCCGGGACCCCAGTATGGAGACAGCCTGCTCGGCCCTGCTCAACTTCACTGTCACGGAGCCGGAGCGAGTCAGAAAGGACCCTTGTTTCAGAAGCCTTGAGTCACTGTTGAGTGAAGCACTTCCTGTTCTCCTGCACAAACCTCGCCTCTTGGTCCTGGCTGCCAATCTTTGTACTCTGGGGCTCATGATTGGCAGGCTTAAACCAGCTCCTAAAGCTCCGGTTGAAGCAAGCCAAAGGCGGTTCTTCTCCGCAGCCCTGCGGTTCCTCCGTGGTGCCCTGGACTCCAGCTCGGGCCCGGGCCCAGTTAGGGTGAGCCCTGCCTGGGAGGAGTGGTGGGAGGAGGCTGGGGAGCTGTGGAGGCTGGGTCTGCAGGCCCTGGGAGGTTGTGTGAAGGCCCAGCCCTGGATCATCACCCTGGTCAGGGAGGAGGGTTGGCTCAACCACACCCTTGCCATGCTGGGCTCCTGTAGCACCCTGCCTGACCCCCACACCCAGGGGGCACTAGAGGAGGCCCTCTGCGCAGTGGCACTCCAGTGCCCGTTCTGTCGACAGGAGATCAGTGTCCTCCTGAAGAGCAGTGCCAAGGGAGCCTTGGGTAGCATGGACAGTCTGAGGAAATCCCTTACCACAAACTGAAGCACTTGTGTATTGATCATGAAGATgggggccaggagtttttcctgagcAGACACGTAACATGATCAGGAAAAACTTCAGCCTCGAGACTAAGACAAACTGGCTGAATATATCATTGTTTAGTAACAGGCTATACTTGCTTTGTCATACGCTTCCTGATAAACATTGCACTTGTTTGTCAGATGGTATGACTGTATATAAGCAGTCTGTTACATGTATGAAAGTtaagaataaaataaataattattttgttAAAGA

Function

symbol description
ncdn Predicted to be involved in neuron projection development and regulation of neuronal synaptic plasticity. Predicted to be located in postsynapse. Predicted to be active in dendrite. Orthologous to human NCDN (neurochondrin).

NR:

description
neurochondrin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561938.2 False 3096 mRNA 0.56 8 35693269 35702960
XM_021561939.2 True 2873 mRNA 0.57 8 35693605 35702960

Neighbor

gene id symbol gene type direction distance location
LOC110489299 LOC106570032 coding upstream 49481 35638212 ~ 35643788 (+)
LOC110489268 LOC106570027 coding upstream 124878 35558560 ~ 35568391 (+)
LOC110489253 LOC106597474 coding upstream 171816 35441034 ~ 35521453 (+)
LOC118936453 LOC106595653 coding upstream 200751 35487909 ~ 35492518 (+)
LOC110489254 LOC106595653 coding upstream 205100 35458552 ~ 35488169 (+)
LOC110489281 LOC106570035 coding downstream 954 35703914 ~ 35715579 (+)
ago4 LOC106511154 coding downstream 74288 35777248 ~ 35814633 (+)
LOC118946548 NA coding downstream 104734 35807694 ~ 35807777 (+)
LOC110489318 LOC106570172 coding downstream 112848 35815808 ~ 35818696 (+)
LOC110489309 LOC106570039 coding downstream 119775 35822735 ~ 35836770 (+)
G2322078 NA non-coding upstream 3598 35689465 ~ 35689671 (+)
G2322076 NA non-coding upstream 5702 35687366 ~ 35687567 (+)
G2322074 NA non-coding upstream 6616 35686423 ~ 35686653 (+)
G2321763 NA non-coding upstream 66764 35620469 ~ 35626505 (+)
G2322032 NA non-coding upstream 87018 35605963 ~ 35606251 (+)
G2322045 psmb2 non-coding downstream 13837 35716797 ~ 35727390 (+)
G2322954 NA non-coding downstream 49927 35752887 ~ 35754722 (+)
G2322985 NA non-coding downstream 73932 35776892 ~ 35777165 (+)
G2322988 NA non-coding downstream 99773 35802733 ~ 35805578 (+)
G2321721 LOC106588478 other upstream 98356 35586587 ~ 35594913 (+)
G2321738 LOC106597474 other upstream 195142 35491131 ~ 35498127 (+)
LOC110487604 LOC106570016 other upstream 415606 35025996 ~ 35277684 (+)
LOC110489302 LOC106570022 other upstream 722643 34969069 ~ 34972560 (+)
LOC110511601 LOC106570043 other downstream 589818 36285727 ~ 36298893 (+)
G2323520 NA other downstream 625444 36328404 ~ 36408978 (+)
G2323704 NA other downstream 944853 36647813 ~ 36648422 (+)
LOC110488401 LOC106570049 other downstream 1236122 36939068 ~ 37071496 (+)
G2324003 NA other downstream 1349105 37052065 ~ 37062067 (+)

Expression


Co-expression Network