LOC110489281 (LOC106570035)


Basic Information

Item Value
gene id LOC110489281
gene name LOC106570035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35703914 ~ 35715579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561971.2
CCTGCGTCGCTACTCCAACTAACTCACTCATCAGTCTACCTTCAGCTCGTCTTTATCCATCCTCCTGTTGCCCGCCATAACCCCCTGTTCAAACGTAACTCCAATCTCTGCAACCCGGACACCCTTTACAACAAGGTCATCATGCTTTGGAAATCTCGAACGAAGACTGAGCCCTACTGTCAGGACCGCGCGGACGGACTGACCGGTTCCTCGCCCAGCGGGCGACTGTCCCAACTCTCCTCGCTGAACCAGGCAGCTTACTCCTCGGCTCCACCGCTCTGCCACACACCGGCCTCTGACTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACACCTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGGTCGCGAGCGGACGAGGGGGGGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCACCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTTGGGGAGGGTGCTGCAGCGCTAGGGGACGGGCCTCTTGGAATGCACATTGGACATCACGGACTGGAGGACATGCAGGTGGGTTTATTTGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGTTCCCATCCCCTCCAAGCTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATGGGTTCCGTGTCCAACCCGGGGGAGGTGTTCTGTTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGAGAGGTGCAGCGACGGCTGGCCCCGCCCGAGTGCCTCAACGCTTCCCTGTTGGGCGGAGTCCTGCGCAGggCAAAGTCAAAGAATGGTGGGCGCTGTCTGAGAGAGCGTCTGGAGAAGATTGGGCTCAATCTCCCCGCTGGGCGACGCAAGGCAGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTCGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGAGATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGCCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAACCTCACCCACTTCAGCCTACTCACCCACGGCTTCGGCACCCCCGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTATCTGGTGGAGGCTATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAGGTGGGACGCCTTCTGATGAGATTGGAGATTTGACGGACTGACTGATTTCCATATTCCATCCTTTCTTAGCCTCCTTTAAGAGGACAAAGACATATTTCTTCCCCAAATTCTTACTGCGGCCCAATCCCTCACAGGGAAGGGCATGGTGATGTTTGTGCTGTATATGTGTCGGCCACTTCACTCAAAGACGCATGGACTTCTTCTGGGCTGCTGGTTTTCTAGGCAGGGTCCATTCCTAACTGCCAATGACATTTTCTGAATGAGTTCTGACTTCATgtccctgtatgtctgtctgactgtcaagATGATACCCCAACCGGCATTCATTGGAATGCCCTCTACTTCCCGTAGAGATACGACTATTTATCTCTATGCTTACTTCCCTTCAAAGTCTGTTTGACTCTCTGGACTTGGACCCACTTTGAAAACATCTCGTCACAAGAGATGAGCCATATCCAGGACAGCCAACTTTCTTAGTTTTGCTCATTCCTCATCTGGACATTGGATACCGTCCAACTCCACCCCATAGGATGGGCAGTTTGTGTACTACGATTCTATGTGGGTGCTGCTGGGTAATTGAGTTCTTTGGGGGTGGGGGCATGGTGTCACAGGCAGCTATGGGATTTTTTTTTGGTGAAGGGGAGGGTAGGTGTGGGTAAAttaagaaaaaaaacacatcatTTTGTACTTACTGTGTATGTTTAATATTAATGTTATTACTGTTATTGTATTACGGCATAAATGTAATATATTATTAAAGAATAACTGATGCAGA
>XM_021561972.2
TCGCTACTCCAACTAACTCACTCATCAGTCTACCTTCAGCTCGTCTTTATCCATCCTCCTGTTGCCCGCCATAACCCCCTGTTCAAACGTAACTCCAATCTCTGCAACCCGGACACCCTTTACAACAAGGTCATCATGCTTTGGAAATCTCGAACGAAGACTGAGCCCTACTGTCAGGACCGCGCGGACGGACTGACCGGTTCCTCGCCCAGCGGGCGACTGTCCCAACTCTCCTCGCTGAACCAGGCAGCTTACTCCTCGGCTCCACCGCTCTGCCACACACCGGCCTCTGACTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACACCTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGGTCGCGAGCGGACGAGGGGGGGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCACCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTTGGGGAGGGTGCTGCAGCGCTAGGGGACGGGCCTCTTGGAATGCACATTGGACATCACGGACTGGAGGACATGCAGGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGTTCCCATCCCCTCCAAGCTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATGGGTTCCGTGTCCAACCCGGGGGAGGTGTTCTGTTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGAGAGGTGCAGCGACGGCTGGCCCCGCCCGAGTGCCTCAACGCTTCCCTGTTGGGCGGAGTCCTGCGCAGggCAAAGTCAAAGAATGGTGGGCGCTGTCTGAGAGAGCGTCTGGAGAAGATTGGGCTCAATCTCCCCGCTGGGCGACGCAAGGCAGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTCGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGAGATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGCCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAACCTCACCCACTTCAGCCTACTCACCCACGGCTTCGGCACCCCCGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTATCTGGTGGAGGCTATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAGGTGGGACGCCTTCTGATGAGATTGGAGATTTGACGGACTGACTGATTTCCATATTCCATCCTTTCTTAGCCTCCTTTAAGAGGACAAAGACATATTTCTTCCCCAAATTCTTACTGCGGCCCAATCCCTCACAGGGAAGGGCATGGTGATGTTTGTGCTGTATATGTGTCGGCCACTTCACTCAAAGACGCATGGACTTCTTCTGGGCTGCTGGTTTTCTAGGCAGGGTCCATTCCTAACTGCCAATGACATTTTCTGAATGAGTTCTGACTTCATgtccctgtatgtctgtctgactgtcaagATGATACCCCAACCGGCATTCATTGGAATGCCCTCTACTTCCCGTAGAGATACGACTATTTATCTCTATGCTTACTTCCCTTCAAAGTCTGTTTGACTCTCTGGACTTGGACCCACTTTGAAAACATCTCGTCACAAGAGATGAGCCATATCCAGGACAGCCAACTTTCTTAGTTTTGCTCATTCCTCATCTGGACATTGGATACCGTCCAACTCCACCCCATAGGATGGGCAGTTTGTGTACTACGATTCTATGTGGGTGCTGCTGGGTAATTGAGTTCTTTGGGGGTGGGGGCATGGTGTCACAGGCAGCTATGGGATTTTTTTTTGGTGAAGGGGAGGGTAGGTGTGGGTAAAttaagaaaaaaaacacatcatTTTGTACTTACTGTGTATGTTTAATATTAATGTTATTACTGTTATTGTATTACGGCATAAATGTAATATATTATTAAAGAATAACTGATGCAGA
>XM_021561974.2
GCATGCATGGAGAAAATTTAGGACACTTTCTGACAGAAGCATCCGTAACAGCACGTGGTTGAGGATTGAGACATTTCTAAAAGCAAGAAGAAGAAAAGCTTTAGCTACTTCCTGTATGGATCTTGTTGACACATGAAAGTATCTTGGATTATAACTATTTGGTGACACGGACAAGACATCCATATCCTAGACGGTGAATTTGGGTAACCAGAAGAGATGTTAGTCCACACATATTCGGCTATGGACCGCGCGGACGGACTGACCGGTTCCTCGCCCAGCGGGCGACTGTCCCAACTCTCCTCGCTGAACCAGGCAGCTTACTCCTCGGCTCCACCGCTCTGCCACACACCGGCCTCTGACTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACACCTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGGTCGCGAGCGGACGAGGGGGGGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCACCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTTGGGGAGGGTGCTGCAGCGCTAGGGGACGGGCCTCTTGGAATGCACATTGGACATCACGGACTGGAGGACATGCAGGTGGGTTTATTTGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGTTCCCATCCCCTCCAAGCTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATGGGTTCCGTGTCCAACCCGGGGGAGGTGTTCTGTTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGAGAGGTGCAGCGACGGCTGGCCCCGCCCGAGTGCCTCAACGCTTCCCTGTTGGGCGGAGTCCTGCGCAGggCAAAGTCAAAGAATGGTGGGCGCTGTCTGAGAGAGCGTCTGGAGAAGATTGGGCTCAATCTCCCCGCTGGGCGACGCAAGGCAGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTCGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGAGATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGCCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAACCTCACCCACTTCAGCCTACTCACCCACGGCTTCGGCACCCCCGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTATCTGGTGGAGGCTATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAGGTGGGACGCCTTCTGATGAGATTGGAGATTTGACGGACTGACTGATTTCCATATTCCATCCTTTCTTAGCCTCCTTTAAGAGGACAAAGACATATTTCTTCCCCAAATTCTTACTGCGGCCCAATCCCTCACAGGGAAGGGCATGGTGATGTTTGTGCTGTATATGTGTCGGCCACTTCACTCAAAGACGCATGGACTTCTTCTGGGCTGCTGGTTTTCTAGGCAGGGTCCATTCCTAACTGCCAATGACATTTTCTGAATGAGTTCTGACTTCATgtccctgtatgtctgtctgactgtcaagATGATACCCCAACCGGCATTCATTGGAATGCCCTCTACTTCCCGTAGAGATACGACTATTTATCTCTATGCTTACTTCCCTTCAAAGTCTGTTTGACTCTCTGGACTTGGACCCACTTTGAAAACATCTCGTCACAAGAGATGAGCCATATCCAGGACAGCCAACTTTCTTAGTTTTGCTCATTCCTCATCTGGACATTGGATACCGTCCAACTCCACCCCATAGGATGGGCAGTTTGTGTACTACGATTCTATGTGGGTGCTGCTGGGTAATTGAGTTCTTTGGGGGTGGGGGCATGGTGTCACAGGCAGCTATGGGATTTTTTTTTGGTGAAGGGGAGGGTAGGTGTGGGTAAAttaagaaaaaaaacacatcatTTTGTACTTACTGTGTATGTTTAATATTAATGTTATTACTGTTATTGTATTACGGCATAAATGTAATATATTATTAAAGAATAACTGATGCAGA
>XM_021561975.2
ATGCATGGAGAAAATTTAGGACACTTTCTGACAGAAGCATCCGTAACAGCACGTGGTTGAGGATTGAGACATTTCTAAAAGCAAGAAGAAGAAAAGCTTTAGCTACTTCCTGTATGGATCTTGTTGACACATGAAAGTATCTTGGATTATAACTATTTGGTGACACGGACAAGACATCCATATCCTAGACGGTGAATTTGGGTAACCAGAAGAGATGTTAGTCCACACATATTCGGCTATGGACCGCGCGGACGGACTGACCGGTTCCTCGCCCAGCGGGCGACTGTCCCAACTCTCCTCGCTGAACCAGGCAGCTTACTCCTCGGCTCCACCGCTCTGCCACACACCGGCCTCTGACTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACACCTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGGTCGCGAGCGGACGAGGGGGGGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCACCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTTGGGGAGGGTGCTGCAGCGCTAGGGGACGGGCCTCTTGGAATGCACATTGGACATCACGGACTGGAGGACATGCAGGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGTTCCCATCCCCTCCAAGCTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATGGGTTCCGTGTCCAACCCGGGGGAGGTGTTCTGTTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGAGAGGTGCAGCGACGGCTGGCCCCGCCCGAGTGCCTCAACGCTTCCCTGTTGGGCGGAGTCCTGCGCAGggCAAAGTCAAAGAATGGTGGGCGCTGTCTGAGAGAGCGTCTGGAGAAGATTGGGCTCAATCTCCCCGCTGGGCGACGCAAGGCAGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTCGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGAGATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGCCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAACCTCACCCACTTCAGCCTACTCACCCACGGCTTCGGCACCCCCGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTATCTGGTGGAGGCTATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAGGTGGGACGCCTTCTGATGAGATTGGAGATTTGACGGACTGACTGATTTCCATATTCCATCCTTTCTTAGCCTCCTTTAAGAGGACAAAGACATATTTCTTCCCCAAATTCTTACTGCGGCCCAATCCCTCACAGGGAAGGGCATGGTGATGTTTGTGCTGTATATGTGTCGGCCACTTCACTCAAAGACGCATGGACTTCTTCTGGGCTGCTGGTTTTCTAGGCAGGGTCCATTCCTAACTGCCAATGACATTTTCTGAATGAGTTCTGACTTCATgtccctgtatgtctgtctgactgtcaagATGATACCCCAACCGGCATTCATTGGAATGCCCTCTACTTCCCGTAGAGATACGACTATTTATCTCTATGCTTACTTCCCTTCAAAGTCTGTTTGACTCTCTGGACTTGGACCCACTTTGAAAACATCTCGTCACAAGAGATGAGCCATATCCAGGACAGCCAACTTTCTTAGTTTTGCTCATTCCTCATCTGGACATTGGATACCGTCCAACTCCACCCCATAGGATGGGCAGTTTGTGTACTACGATTCTATGTGGGTGCTGCTGGGTAATTGAGTTCTTTGGGGGTGGGGGCATGGTGTCACAGGCAGCTATGGGATTTTTTTTTGGTGAAGGGGAGGGTAGGTGTGGGTAAAttaagaaaaaaaacacatcatTTTGTACTTACTGTGTATGTTTAATATTAATGTTATTACTGTTATTGTATTACGGCATAAATGTAATATATTATTAAAGAATAACTGATGCAGA

Function

NR:

description
transcription factor AP-2-epsilon isoform X4

GO: NA

KEGG:

id description
K09180 TFAP2N; transcription factor AP-2, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561971.2 False 2221 mRNA 0.54 7 35703914 35715579
XM_021561972.2 False 2203 mRNA 0.55 7 35703920 35715579
XM_021561974.2 False 2281 mRNA 0.53 7 35704824 35715579
XM_021561975.2 True 2267 mRNA 0.53 7 35704826 35715579

Neighbor

gene id symbol gene type direction distance location
ncdn ncdn coding upstream 954 35693269 ~ 35702960 (+)
LOC110489299 LOC106570032 coding upstream 60126 35638212 ~ 35643788 (+)
LOC110489268 LOC106570027 coding upstream 135523 35558560 ~ 35568391 (+)
LOC110489253 LOC106597474 coding upstream 182461 35441034 ~ 35521453 (+)
LOC118936453 LOC106595653 coding upstream 211396 35487909 ~ 35492518 (+)
ago4 LOC106511154 coding downstream 61669 35777248 ~ 35814633 (+)
LOC118946548 NA coding downstream 92115 35807694 ~ 35807777 (+)
LOC110489318 LOC106570172 coding downstream 100229 35815808 ~ 35818696 (+)
LOC110489309 LOC106570039 coding downstream 107156 35822735 ~ 35836770 (+)
LOC110488378 NA coding downstream 372529 36088108 ~ 36092710 (+)
G2322078 NA non-coding upstream 14243 35689465 ~ 35689671 (+)
G2322076 NA non-coding upstream 16347 35687366 ~ 35687567 (+)
G2322074 NA non-coding upstream 17261 35686423 ~ 35686653 (+)
G2321763 NA non-coding upstream 77409 35620469 ~ 35626505 (+)
G2322032 NA non-coding upstream 97663 35605963 ~ 35606251 (+)
G2322045 psmb2 non-coding downstream 1218 35716797 ~ 35727390 (+)
G2322954 NA non-coding downstream 37308 35752887 ~ 35754722 (+)
G2322985 NA non-coding downstream 61313 35776892 ~ 35777165 (+)
G2322988 NA non-coding downstream 87154 35802733 ~ 35805578 (+)
G2321721 LOC106588478 other upstream 109001 35586587 ~ 35594913 (+)
G2321738 LOC106597474 other upstream 205787 35491131 ~ 35498127 (+)
LOC110487604 LOC106570016 other upstream 426251 35025996 ~ 35277684 (+)
LOC110489302 LOC106570022 other upstream 733288 34969069 ~ 34972560 (+)
LOC110511601 LOC106570043 other downstream 577199 36285727 ~ 36298893 (+)
G2323520 NA other downstream 612825 36328404 ~ 36408978 (+)
G2323704 NA other downstream 932234 36647813 ~ 36648422 (+)
LOC110488401 LOC106570049 other downstream 1223503 36939068 ~ 37071496 (+)
G2324003 NA other downstream 1336486 37052065 ~ 37062067 (+)

Expression


Co-expression Network