XLOC_004171 (fam120a)


Basic Information

Item Value
gene id XLOC_004171
gene name fam120a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27705030 ~ 27739049 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007972
taattttaacatttaaccgatttttattattagttctgatttttaaaaaaacgcAGCCtggttaaaaaatgaataaatattaatgtttCCGACCTTTAGACGGGTAGTGGCCAGCCATTACGAGAGGTTTTATAATATCGTGAGAGTGTATCATGGAGTATGGATCATAAGCATGACATGCAACAGTTCTCCAAAGTGAACCGCGCCCACCGAACTCCAGACTCCTCCTCCGTTGTGACTGTACGTGCCCTGCGCCGCCGCTCTTCTCTCCGTACCTCTCTTTCCCCTACACACCAGACACATCCAGACCGCAGACATGGCTCCGTAAAGGTGCACATGGCGGCCAGCAGCCATGAACCAAAAAACAACTCACCAAAAACTACAGATGCATCTCCGATTTGATTAATTTTGGACCGACCAACTTCTACATCCGCTGCAATATTCTCCAGTCCGGTTTTCAGCATTCGGGAGAGGAGGCTGCTCGCTTGCAACTCTGTCTCCATTTTCTCCAGACAATTTTACGTTTatcccgaaataaaacaaaacaaaaaacaaaagtcatGGGTGTGCAGGGTTTCCAGGAATACATTGAGAAGCATTGCCCCAACGCCGTGGTGCCGGTGGAGCTCCAGAAGCTCGCCCGGGGGAGTCTGGTCGGCGGCGGCCGGCAGAGACCTCCTCAAACGCCGCTCCGGCTGCTGGTGGACGCCGAGAACTGTCTTCACCGGCTTTACGGCGGCTTTTACACCGACTGGGTGAGCGGAGGCCAGTGGAACCATATGCTCGGGTACCTCGCCGCCCTTGCCAAAGCCTGTTTCAACGGCAACATCGAGCTGCTAGTGTGCTTCAATGGCGCCCTGGAGAAAGGCCGTCTCCACGAGTGGGTCAAGCGACAGGTGAACGAGAGGCAGACCGCCCAGCAGATTGTCAGTCACGTCCAGAACAAGGGAACACCGCCGCCCAAGGTCTGGTTTCTGCCCCCGGTGTGCATGGCCCACTGCATCCGCCTGGCGCTCCTCAGGTTCCACATCGGGGTTGTCCAGACCATCGAGGATCATCACCAGGAAGTGATTGCCTTATTTCGAGAGAACGGCTTCCATGGTCTGGTTGCCTATGATTCGGATTACGCCCTGTGCAACATCCCATATTACTTCAGTGCCCATGCCCTCAAACTCAGCCGCAACGGCAAAAGCCTCACCACCAGCCAATACCTGATGCACGAAGTTGCCAAGCAGCTTAATCTCAATCCAAATCGTTTCGTCATTTTTGCTTCACTTTTAGGTAATCACATACTGCCTGATGAAGACTTGGCTGCCTTTCACTGGAGTTTACTTGGTCCTGAGCATCCTTTAGCATCCTTGAAGGTTCGTGCCCATCAGCTCGTTCTTCCTCCATGTGACGTCGTCATTAGAGCTGTGGCAGATTATGTCCGAAACCTGCAAGATGTCCACGATCTGGAAGCTATTGCTAAAGACATATTCAAGCATTCGCAGTCCAGAACCGATGACAAAGTTTTCCGTTTAAAGAAAGCAGTGGATTATTACAGCACCGCCAGCAAGCCTCCTCACTTCCCCCCCTATTTAGTCAGACCAAATCAAATGGGAATGCCAGCAGCAACGCAGATGCTTAACATTCCAGGCAAACCTGGGGTCCAGCATGGCTTATCCGGCCCTCCACTGGCAGGGTCTGTCCATGAGGCGGAGCAGTCTAGTAAAGGGCTCTTAGAACAGAACAGCTACAGCAACATTCCTAATGACAGAAAGCAGCACACTCCGCTCTACGAAAGACTGTCCCCCATCAACCCCAATCACAGTGGCACCTCTAACCACACAGACCCAGCCTTCTGCACCACCTCGTCCACATCCTCAGAGAATGAGGAAAACACAGGCTCCACTGCCAACCATGTAAGTGACCATAAGCGATGGGACAAACAGAAGAACCAGATGGACAACATCCCAGAAGGAGACCATGTGGACCAAAATGATTCTGATCCTTCTGCGACCTCTCCTGTGAACCAAGGCCTGGAGGGCAAAGGTCATGTCGGGGTCAACGTCCAGATTCCATCCCTGCTTTCAATGCCAACAAGAAACCACATGGACATCACCACTCCTCCTTTACCAGTGGTGGCGCCAGAGGTGCTGCGGGTCGCTGAGCACAGACACAAAAAGGGCCTCATGTACCCATACATCTACCACGTTCTTACCAAGggTGAGATTAAATTATCGGTCACCATTGAGGATGAAGCTAATAAAGACCTGCCCTCTGCGGTACAGCTTTACCGGCCTATTCGTCAGTATGTTTACGGGGTGCTCTTCAGCCTGGCCGAGGCCAAAAAGAGGGCCGAGAGACTGGCCATGAGGAGAAATTGTCTCCCTGAATATCCAGCGGTAATCATAAAAGAATGGGCTGCTTACAAAGGCAAATCACCACACACCCCTGAACTGGTGGAAGCTCTACCTTTCCGAGAGTGGACCTGCCCAAACCTGAAGAAACTCTGGCTGGGCAAAGCAGTGGAGGACAAGAACCGCAGGATGAGGGCTTTTCTGGCCTGCATGAGGTCTGACACTCCAGCAATGCTGAACCCTGCCAACGTCCCCACACCTCTCATGGTGCTGTGCTGCGTTCTGCGGTTTATGTTACAATGGCCAGGAGTAAGAATTTTGCGTCGTAACGAACTTGACGCTTTCCTAGCTCAAGCACTTTCTCCTAAACTTTATGAGCCTGACCAGCTGCAGGACCTGAAGATTGATAACCTGGATCCACGTGGCGTTCAGCTGGCTGCTCTTTTTATGAGCGGCGTGGATATGGCGCTGTTTGCCAATGATGTGTGCGGGCAGCCTATTCCATGGGAACACTGCTGTCCGTGGATGTATTTTGATGGAAAGCTGCTACAAAGTAAACTCAACCGGGCCAACAGGGACAAGGCCCCGCTTATTGACCTCTGCGATGGCCAGACTGAACTAGTTGCCAAGGTGGAGAAGATGCGTCAGAGTATTCTGGAGGGTCTGAACTTCTCTCGCCCACCACAGCCCCTTGCCTTCCCTCCGCCACCTCCACATGCAATGCCTTTCTATCCGTCAAACAGCACCTTCTACCCTCCGCCGCCTCTGCCCCCGATGCAGGGGAGAGGCAGAGGCATGCCTGTAGGACTTCAGGCCATTCCATCACAGGGTGGTAAGCTTGAGATTGCAGGCACAGTGGTGGGTCAGTGGGCTGGTAGTCGTCGTGGCAGAGGAAGAGCCCCATTTCCCATACAAGTGGTGTCAGTTGGTGGACCAACCAGAGGTCGTCCAAGAGGTGTGATTTCTACTCCTGTCATAAGGACCTTTGGACGAGGAACCAGATACCTTAGTAGAGGGTTCAAGAGTCAGGGATCATTCCAGagcaagcctGCATATGCTGCCTCAACCTATGAAGTGATAAAAGACCGAAAGAAGCCCAAGTTGGCGACCGACGCACCACATCTGCCCTCAGATCACTCCACAGTGGCAGAAAACGGCTTGGCGGAGGGCAAAGATGCAGACCAGCTCATAGGGAACCAAGGGGAAAGCAGGGCTCCAAACCAACCTGAAAGTGCCTTTAGCAACGAATCTAAAATGTGCAATACTAATCCTCATTTAAATGCACTAAATGAAGATGGCGAGGGCCACAGAGATGAAGCTCTGAGCGTCGCCGTCTTAAAAGCAGAAGAGTAAACCTATTTTTATAGAGAGGGTGATAGATGGTGAAGCGTTAAGGAATATTTGGAAGGATGGAAGGCCTACAGTTGGTGCACATTTTTTCCTCTCCAAAGTGAAAAACGAGGACTTGGGAATCTTTGAAATCCCTCTTCAATGTCAACGAGTTTAAACCACAAGCAATGATGAGAAAACCTCTCGGTAAAACATAGATATACAAGTCAAAAAAATGGAGATTCATAGCAGTTTCATGATGATGATAGACTGTGTTCTCCCTGGTCGACGTTTCAGAACTGGTTACatgaaattattttactttcacgATGAAATAGAGAAACTGAAATAACTGATTTTCCTTTGCCAGTCTTTTAGTTTTAGTACGTTGAGATTCAagtaccatatatatatatatttgccatTGTAATTGAGTTTGTATCGTCACAGTAAATGCTTTTAATCTTATGGTTTGAAAACGTAAAGCTCACGATTTGAAAAAGAGAACACATTTCTCACGTGTCAGCGTTGTGAGTTTACTCCTGTTTCAAATGTGCGGTTGTTTTGACATTGAGTAACTAGTGTTAATACTACTGCATCTTGCGTTCTGATGATTTCGATGTCATACGATAGCGGTTAATGCGTCAAAGAAACGGTTTAAAACCTCACAAGCTCTTGAAAAGCACCGACGTCTCTTTTTTCCGTGTCAGAAAACGCCATGCATCAGTGATCAGCGATTACCGTGGTTTCTTGAATCAGCCGTAGCACATTAGTACAACTGTCTCAGCTAAACTTTCTGCATGGCTCACgattaaaagttttaaacaaacaaaatggtgTGTAGTTATGATGCATGTTGTCCTATTTCTTCATTACAAATACTGTGCCCATCtgcaaaattgaaaaaataaaggcTGATAATCAGTAATAGTCCTATAAAAGGTGTTAACTGTTAGTCAGTAACTGATTTGCTCTAACCTTAAGTTgattatttttgtgatttattgaCCTCTGTTGTATTTACTCCAACATTATCTAGCCACTTTAAATATTGTTAATCCTGCTGTACTCATCACTGTATACATTACTGTTCTCTGTTGCTGTTTTCCGCATTCATACTAGCAGATCATCTctgaaaaaacaaaatgtttgagAAAAAATGGCTTTGATCTTGATAAATTCTCCCCCTTTTCTTAGCTCGATACAAGTTTTTGCGAAACATTCGACCCTCCCATTTGAGAGTTTAGCCTAAGCAAGTACACTTGATGTTTACTTTAGTGTTATAAACGTACTTCTAAACGAGAATCATTACTTCTCCATCTAATCCTCCTGATGCTTTTCATTGCACATTAGTGATCAGAAATATGGTGTATTCCCCTCAGTCCCCAGCCGCAAGTCTAAGTAGGTTACCTTGATGTAAGTTGATCGGAGTTTCTTCCTAACTCATGGGTTGTTAAAGAATGAACTACTGTTGGGTTTGAGTGATTGTTGATGGGTTGTGGTGTGATGTATTTCGAAGGAAATTGAATGCAACTTACAATGCTTAATAAAAATCTTTATTCTTTTAGAATAA
>TCONS_00008473
CGTCTTAAAAGCAGAAGAGTAAACCTATTTTTATAGAGAGGGTGATAGATGGTGAAGCGTTAAGGAATATTTGGAAGGATGGAAGGCCTACAGTTGGTGCACATTTTTTCCTCTCCAAAGTGAAAAACGAGGACTTGGGAATCTTTGAAATCCCTCTTCAATGTCAACGAGTTTAAACCACAAGCAATGATGAGAAAACCTCTCGGTAAAACATAGATATACAAGTCAAAAAAATGGAGATTCATAGCAGTTTCATGATGATGATAGACTGTGTTCTCCCTGGTCGACGTTTCAGAACTGGTTACatgaaattattttactttcacgATGAAATAGAGAAACTGAAATAACTGATTTTCCTTTGCCAGTCTTTTAGTTTTAGTACGTTGAGATTCAagtaccatatatatatatatttgccatTGTAATTGAGTTTGTATCGTCACAGTAAATGCTTTTAATCTTATGGTTTGAAAACGTAAAGCTCACGATTTGAAAAAGAGAACACATTTCTCACGTGTCAGCGTTGTGAGTTTACTCCTGTTTCAAATGTGCGGTTGTTTTGACATTGAGTAACTAGTGTTAATACTACTGCATCTTGCGTTCTGATGATTTCGATGTCATACGATAG
>TCONS_00007973
atGGGTGTGCAGGGTTTCCAGGAATACATTGAGAAGCATTGCCCCAACGCCGTGGTGCCGGTGGAGCTCCAGAAGCTCGCCCGGGGGAGTCTGGTCGGCGGCGGCCGGCAGAGACCTCCTCAAACGCCGCTCCGGCTGCTGGTGGACGCCGAGAACTGTCTTCACCGGCTTTACGGCGGCTTTTACACCGACTGGGTGAGCGGAGGCCAGTGGAACCATATGCTCGGGTACCTCGCCGCCCTTGCCAAAGCCTGTTTCAACGGCAACATCGAGCTGCTAGTGTGCTTCAATGGCGCCCTGGAGAAAGGCCGTCTCCACGAGTGGGTCAAGCGACAGGTGAACGAGAGGCAGACCGCCCAGCAGATTGTCAGTCACGTCCAGAACAAGGGAACACCGCCGCCCAAGGTCTGGTTTCTGCCCCCGGTGTGCATGGCCCACTGCATCCGCCTGGCGCTCCTCAGGTTCCACATCGGGGTTGTCCAGACCATCGAGGATCATCACCAGGAAGTGATTGCCTTATTTCGAGAGAACGGCTTCCATGGTCTGGTTGCCTATGATTCGGATTACGCCCTGTGCAACATCCCATATTACTTCAGTGCCCATGCCCTCAAACTCAGCCGCAACGGCAAAAGCCTCACCACCAGCCAATACCTGATGCACGAAGTTGCCAAGCAGCTTAATCTCAATCCAAATCGTTTCGTCATTTTTGCTTCACTTTTAGGTAATCACATACTGCCTGATGAAGACTTGGCTGCCTTTCACTGGAGTTTACTTGGTCCTGAGCATCCTTTAGCATCCTTGAAGGTTCGTGCCCATCAGCTCGTTCTTCCTCCATGTGACGTCGTCATTAGAGCTGTGGCAGATTATGTCCGAAACCTGCAAGATGTCCACGATCTGGAAGCTATTGCTAAAGACATATTCAAGCATTCGCAGTCCAGAACCGATGACAAAGTTTTCCGTTTAAAGAAAGCAGTGGATTATTACAGCACCGCCAGCAAGCCTCCTCACTTCCCCCCCTATTTAGGTGAGATTGTCAATATGTTTGATTTTCCTCCTCTCCAACATTTTTCATCGCTCTTAGTACAAgatGCGGAGCAGTCTAGTAAAGGGCTCTTAGAACAGAACAGCTACAGCAACATTCCTAATGACAGAAAGCAGCACACTCCGCTCTACGAAAGACTTGACCCAGCCTTCTGCACCACCTCGTCCACATCCTCAGAGAATGAGGAAAACACAGGCTCCACTGCCAACCATGTAAGTGACCATAAGCGATGGGACAAACAGAAGAACCAGATGGACAACATCCCAGAAGGAGACCATGTGGACCAAAATGATTCTGATCCTTCTGCGACCTCTCCTGTGAACCAAGGCCTGGAGGGCAAAGGTCATGTCGGGGTCAACGTCCAGATTCCATCCCTGCTTTCAATGCCAACAAGAAACCACATGGACATCACCACTCCTCCTTTACCAGTGGTGGCGCCAGAGGTGCTGCGGGTCGCTGAGCACAGACACAAAAAGGGCCTCATGTACCCATACATCTACCACGTTCTTACCAAGggTGAGATTAAATTATCGGTCACCATTGAGGATGAAGCTAATAAAGACCTGCCCTCTGCGGTACAGCTTTACCGGCCTATTCGTCAGTATGTTTACGGGGTGCTCTTCAGCCTGGCCGAGGCCAAAAAGAGGGCCGAGAGACTGGCCATGAGGAGAAATTGTCTCCCTGAATATCCAGCGGTAATCATAAAAGAATGGGCTGCTTACAAAGGCAAATCACCACACACCCCTGAACTGGTGGAAGCTCTACCTTTCCGAGAGTGGACCTGCCCAAACCTGAAGAAACTCTGGCTGGGCAAAGCAGTGGAGGACAAGAACCGCAGGATGAGGGCTTTTCTGGCCTGCATGAGGTCTGACACTCCAGCAATGCTGAACCCTGCCAACGTCCCCACACCTCTCATGGTGCTGTGCTGCGTTCTGCGGTTTATGTTACAATGGCCAGGAGTAAGAATTTTGCGTCGTAACGAACTTGACGCTTTCCTAGCTCAAGCACTTTCTCCTAAACTTTATGAGCCTGACCAGCTGCAGGACCTGAAGATTGATAACCTGGATCCACGTGGCGTTCAGCTGGCTGCTCTTTTTATGAGCGGCGTGGATATGGCGCTGTTTGCCAATGATGTGTGCGGGCAGCCTATTCCATGGGAACACTGCTGTCCGTGGATGTATTTTGATGGAAAGCTGCTACAAAGTAAACTCAACCGGGCCAACAGGGACAAGGCCCCGCTTATTGACCTCTGCGATGGCCAGACTGAACTAGTTGCCAAGGTGGAGAAGATGCGTCAGAGTATTCTGGAGGGTCTGAACTTCTCTCGCCCACCACAGCCCCTTGCCTTCCCTCCGCCACCTCCACATGCAATGCCTTTCTATCCGTCAAACAGCACCTTCTACCCTCCGCCGCCTCTGCCCCCGATGCAGGGGAGAGGCAGAGGCATGCCTGGACTTCAGGCCATTCCATCACAGGGTGGTAAGCTTGAGATTGCAGGCACAGTGGTGGGTCAGTGGGCTGGTAGTCGTCGTGGCAGAGGAAGAGCCCCATTTCCCATACAAGTGGTGTCAGTTGGTGGACCAACCAGAGGTCGTCCAAGAGGTGTGATTTCTACTCCTGTCATAAGGACCTTTGGACGAGGAACCAGATACCTTAGTAGAGGGTTCAAGAGTCAGGGATCATTCCAGagcaagcctGCATATGCTGCCTCAACCTATGAAGTGATAAAAGACCGAAAGAAGCCCAAGTTGGCGACCGACGCACCACATCTGCCCTCAGATCACTCCACAGTGGCAGAAAACGGCTTGGCGGAGGGCAAAGATGCAGACCAGCTCATAGGGAACCAAGGGGAAAGCAGGGCTCCAAACCAACCTGAAAGTGCCTTTAGCAACGAATCTAAAATGTGCAATACTAATCCTCATTTAAATGCACTAAATGAAGATGGCGAGGGCCACAGAGATGAAGCTCTGAGCGTCGCCGTCTTAAAAGCAGAAGAGTAA
>TCONS_00007974
GGTGCTGCGGGTCGCTGAGCACAGACACAAAAAGGGCCTCATGTACCCATACATCTACCACGTTCTTACCAAGggTGAGATTAAATTATCGGTCACCATTGAGGATGAAGCTAATAAAGACCTGCCCTCTGCGGTACAGCTTTACCGGCCTATTCGTCAGTATGTTTACGGGGTGCTCTTCAGCCTGGCCGAGGCCAAAAAGAGGGCCGAGAGACTGGCCATGAGGAGAAATTGTCTCCCTGAATATCCAGCGGTAATCATAAAAGAATGGGCTGCTTACAAAGGCAAATCACCACACACCCCTGAACTGGTGGAAGCTCTACCTTTCCGAGAGTGGACCTGCCCAAACCTGAAGAAACTCTGGCTGGGCAAAGCAGTGGAGGACAAGAACCGCAGGATGAGGGCTTTTCTGGCCTGCATGAGGTCTGACACTCCAGCAATGCTGAACCCTGCCAACGTCCCCACACCTCTCATGGTGCTGTGCTGCGTTCTGCGATTGATAACCTGGATCCACGTGGCGTTCAGCTGGCTGCTCTTTTTATGAGCGGCGTGGATATGGCGCTGTTTGCCAATGATGTGTGCGGGCAGCCTATTCCATGGGAACACTGCTGTCCGTGGATGTATTTTGATGGAAAGCTGCTACAAAGTAAACTCAACCGGGCCAACAGGGACAAGGCCCCGCTTATTGACCTCTGCGATGGCCAGGTAAAATTGCCAcgacacaatttaaaaaaaaaaaaaaaa

Function

symbol description
fam120a Orthologous to human FAM120A (family with sequence similarity 120A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-10 Orthologous to human FAM120A (family with sequence similarity 120A).

Ensembl:

ensembl_id ENSDARG00000075021

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007972 False 5244 mRNA 0.47 17 27705030 27739049
TCONS_00008473 False 631 lncRNA 0.36 1 27705970 27706600
TCONS_00007973 False 3042 mRNA 0.53 19 27706579 27738489
TCONS_00007974 True 744 processed_transcript 0.51 4 27713464 27719269

Neighbor

gene id symbol gene type direction distance location
XLOC_004170 phf2 coding downstream 2195 27644524 ~ 27702835 (-)
XLOC_004169 NA coding downstream 79565 27543578 ~ 27625465 (-)
XLOC_004168 ptpdc1a coding downstream 167369 27511277 ~ 27537661 (-)
XLOC_004167 NA coding downstream 197057 27502205 ~ 27507973 (-)
XLOC_004166 wnt7aa coding downstream 204003 27486584 ~ 27501027 (-)
XLOC_004172 cass4 coding upstream 6569 27745618 ~ 27778831 (-)
XLOC_004173 BX601648.1 coding upstream 44709 27783758 ~ 27806767 (-)
XLOC_004174 NA coding upstream 61810 27800859 ~ 27809715 (-)
XLOC_004175 cstf1 coding upstream 78252 27817301 ~ 27827533 (-)
XLOC_004176 eif4g3a coding upstream 89163 27828212 ~ 27917730 (-)
XLOC_004063 CR854846.1 misc downstream 11577352 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15013339 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15083263 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15113734 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15191768 12512966 ~ 12513262 (-)
XLOC_004165 CR847934.1 non-coding downstream 956601 26748292 ~ 26748429 (-)
XLOC_004152 CR933820.1 non-coding downstream 2035075 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2228050 25475305 ~ 25476980 (-)
XLOC_004180 NA non-coding upstream 457908 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 679827 28418876 ~ 28424141 (-)
XLOC_004182 NA non-coding upstream 774693 28513742 ~ 28522344 (-)

Expression


Co-expression Network