LOC118946501


Basic Information

Item Value
gene id LOC118946501
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 40163806 ~ 40165019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041366.1
tgtccaggccgaggcagcaaagcagccccaaaccatgatgctccctccaccatactttacagttgggatatTTTTGCCAGTAGCACTGGAATATCCAGGTGCAGGGGGAGGCCCCCTGGTTGtaaccttttgcctgtccacgaccattctcttgcctattccctttggatttattaaacatcttaaactccaaccatctgcctcttgtgtctgcatttgggtctcgcctagtGTCATgatacctacactgtgaatgtttaaatgatgtattcaatacagACAAGAAATACAATTTATGTGTTATTTGTTTAAGCACGCTATGTTTGTCTGTTGTGACTTAGATCGGATCAttttgcagaaatccaggtaactccaaagggttcacataattTTGTTGCCACTGTACGAGTATTCTGTTTTGTGAGTGTTACAGCTGCAGAACTCACGGACAGTGATCCAGGAGAGAGATCAAGTGATCAGGGATCCAGAGGGGAAGAACACAGAGATGCGTGACCAGATGGAGTACTTCCTGGAGGGTCAGAAGCCCACCTCTCTGCCCACCAAAGAATGGAAACCCAAACCCCATCATCTACAGTAAGCTGATAAAACCTTCAACAATGCAAGGCAACAAGTCACTTCTTTTAATCATTCATTGAGGTCAAGGCttgggagcgggagagagaataGTATGTGAGTAGTCTGTCTACGcatgtacagtgtattcggaaagtattccgacaacttgactttttccaaatattgttacgttacagccttattctaaaatgtattaaattgttttatt

Function

NR:

description
PREDICTED: tuftelin-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041366.1 True 805 mRNA 0.43 3 40163806 40165019
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110518429 NA coding upstream 10331 40144276 ~ 40153475 (+)
pygo2 LOC106570112 coding upstream 24328 40109359 ~ 40139478 (+)
LOC110489454 LOC106588148 coding upstream 111835 40046685 ~ 40051971 (+)
LOC110513545 LOC106570110 coding upstream 121829 40031984 ~ 40041977 (+)
LOC110488503 LOC106570111 coding upstream 133045 40029411 ~ 40030761 (+)
LOC110519671 LOC106570114 coding downstream 12565 40177584 ~ 40218209 (+)
LOC118946470 NA coding downstream 58090 40223109 ~ 40225313 (+)
aqp10b LOC106570179 coding downstream 79643 40244662 ~ 40250463 (+)
LOC110511529 LOC106597731 coding downstream 212356 40377375 ~ 40378969 (+)
LOC110487657 LOC106570119 coding downstream 254840 40419859 ~ 40426851 (+)
G2328071 LOC106588166 non-coding upstream 6125 40155982 ~ 40157681 (+)
G2328047 NA non-coding upstream 19665 40142640 ~ 40144141 (+)
G2328052 NA non-coding upstream 29429 40133556 ~ 40134377 (+)
G2328067 NA non-coding upstream 30461 40133129 ~ 40133345 (+)
G2328116 NA non-coding downstream 88983 40254002 ~ 40254281 (+)
G2328117 pol3 non-coding downstream 90371 40255390 ~ 40255775 (+)
G2328137 NA non-coding downstream 125626 40290645 ~ 40290866 (+)
G2328374 NA non-coding downstream 149858 40314877 ~ 40315099 (+)
G2328385 NA non-coding downstream 164038 40329057 ~ 40329308 (+)
G2328050 NA other upstream 21739 40139912 ~ 40142067 (+)
dpm3 dpm3 other upstream 503871 39656077 ~ 39659948 (+)
G2327475 NA other upstream 608883 39547083 ~ 39554923 (+)
rps27.1 LOC106605923 other upstream 764956 39396631 ~ 39398852 (+)
G2326978 NA other upstream 984626 39175494 ~ 39179180 (+)
G2328139 NA other downstream 127876 40292895 ~ 40293320 (+)
G2329181 LOC106588233 other downstream 1037150 41202169 ~ 41210485 (+)

Expression

LOC118946501 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC118946501 Expression in each Bioproject

Bar chart with 17 bars.
LOC118946501 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network