LOC118946456 (LOC106570124)


Basic Information

Item Value
gene id LOC118946456
gene name LOC106570124
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 40632742 ~ 40636730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970881.1
GGAGACTCAACTGGATTAATCGAGAGTAGGTCAAGAAAATGAGGTTTGGTTACAACTCTAAACGACATGAGAGTTCCAGATGGAATAGCATCAAAGACTATGGCGAACTCCCTAGGTGTAGCACTAACCACAAGTGTGAAGGAAGAGGTCATAGACAACAGATTTTTGATTTCAAGGATCGGAACTGAAAAAAGTGGTCCCACTTGCCCTTAGTAGTAGGGGTTTCCAAATCAGCCCCCACAACTTCCGTTTGAAATGTAcatcgctagctagctaaaaaaacaacaacaaggacAAATTAACCATCTGTCAACTTTCATGAGATTAAACGATATCTAACCAAGGATTTTACCAAGTGGGAAGCCCTAAGTAGTTCACTAGCCCTCCAGGAAAGTGAGCTGGAAGGACATAACAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCTGAAGAAGGGGCAACAATGTCTGAAGAAGGGGCAACAATGTCTGAAGAAGGGGCAACAATGTCTGAAGAAAGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAGTGTCGGAAAAAGGACAGATAATTGCCTCTGATACTGGTAGTGATGAGGAGTTAGGTGAAGCATTGTCTAATGGCAACCCCATACCACCTaagaggggaaagggaagggCCAAAGGATCAGGCTCTAAGACACCCAAGATACTGAGGGTACTAGACAAGCAGCCACGAGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCCAACTGCACCTCTGAAGCATGGCCGGCCCCAAAAAGTTAAACAACCAAAAAAAAGGGGTAGGCCGAGGAAGAACCCGCTATCAACTGAggaggaagaaaagagaaagaaaccGAAAAGCCAACCTAAGGGATCAAGAGTGTCGAAGCCTCTCGGAAGGCCGCACATCCATCCCTGCATGGATCCCCCAGCCACCTCTGCCGAGCCACGGGGAAGAGGCCGCCCACGCAAGGCAATAATAGGTAAAGGTGCCCACCTACGGAATAACCCACCTCCAACCTCTAAAGTTTCCAAGCCACCCGTTAAAGATGGTTCCCCGCGAAAGAGGGGCCGCCCCTTAGGCTCCGTACTAGCAAACAATGCCAAGAGAGCAGCAGAGAAGGATAGTTCCAATAGTGCACCCCCAGCCAAACGGGGGTGCACTGTTTCTCCAATAGTAAAGCTTTACCGCTGCACCAATGGTAAAGCAAATGTGTTAGATGAAGCTGCCATCCAAGCCCAGAGGCGAAGAGGCAGGAGAAAGACTGTGAAAGTTGATTATACAACTTATGattcagaggaggaggaagatgcaGAGAAAAATGAGGATGAAGACTTGTCTCCAGTTGAAGAGGAAATAAATCCACACAGTGATCATCACAAGGCTAGCAAACCTGGTAAGGTGGCGGCAGCCCTAAAGAAGGTGGGGGTTGTTTCTAAAAGGAGGGGCAGGAAGCCTGGCTCAACCAAAAAGGTTATAAAGTAAAAGGAACCTAGGTGGAGCAGACTGAACAAGACAACACACCTTGTTGCCGGGAAACACAAAATATCAGTAGCATCTTGTAGGATGAATGGACatgtttttaaaattttattaaTGGGATAGCTTTTACCTAACTCTTTAGTTTTCTCAATTAACCTACGTGTCTATTTGCTCTTGCTATTATTGTTGATGGTTTGTGGAAACCAtgtgaatcttttttttttttttttcatagctCGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATGTATTGGTCTGTGCAGATTTATCCCATTTGGATACTGTTTCTAATTCCATGCTCATCCTTTAGGTCATGATATTCTCATTGAGCTTTAACTGAGATGTTTCTTCATCTCCATCCGAAATGTTACAATGTGGGAAAGATTAGGAATGTATGAATCAATTGTCTATTTACTCATATAGGTAAATAAGAAGCTAAAATGGGTTAAATCAGTGTTTTGTTTGCTGTAATTAATAAATAATGAATAACATACTTTTAATTGTTGCCTTATCTCTCCTGAGGGTCTGCAATTTTCTAAATGCTAATGTCTTGTAATTTTATTTCCCTTAATTGCCAAAGCTTTGAATGTAACAACTTCTCCTTCCCAGCCATCTTTGTTTCGATACAGATTTTGTTAGTGTCACTGTCATGGTACCCTCTTCCCTAtcaagtgcactactttgaccagagcctacggacccttgtcaaaagtagaataatggaataaggtgccatttgggggcGGCGCCATTAAACATAGTTGCACTTTCTTTCACTTGGGTCATTGCATACTTCACCTTGTGGTGTCAAGACAGTAACTGTGAACTTCCAATCCAATCATCACTAAGATTTCTCCCAGAAGATGTATAGTTATTGTCTACTGTGAGGGTTTTTTGTTAGTGAGTATCATCCTTGTAATTCACTAAACATCACTACTCATAGTTATTTTTAAGACTTTGTTATCTGTTAGCTGTCAACTCTTTTACTTGTTTTTTATTACTTGGCTTTCAACTGAAGTGGATGGCTTGGTTTCACAGACTGGGCAAAGATGTATGTAAATGTTGTTCAGGATTGCATGTATGTTAAACATGTCTTCTAGCCTGCTATTCATTTCTTTAATGAATTGTGTGCATGACAATATCAGTTCATACTGCATTGCAACTTTGTAATTTCTGTAATATAGAAATCGTAATTGAGGTACACAGCAAAATCTATAATTTGTATGATTTCACGTTCCTGTAACAAGTTTCTTACAATTTCATGTTTTCAACTTGGTCTGGCTCTTATTCTATGTTGCTTCGATTAATTCAATGTTCTTGTCTTGTAATAATGTTTTTGACAATGCAGTTGAACTATACAGATAAAAACATACATATTGTAAAACATACTGCATCTATCTCTGTAATTAGAAATAGGTATGTGAAGCCACCAAACATTAATTTGAGGATAATGTGAATTTGAGTTTTGTTCCAGAGAAAATATTTTGAAAGTTTGCTGTAATAAAGTGAAATGTCaagatttgttttatttgttgatgttttttttaaaatctcaatAAAAACCAAAATATGATTTA

Function

NR:

description
uncharacterized protein LOC109903786

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970881.1 True 3142 mRNA 0.40 2 40632742 40636730
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110488457 NA coding upstream 37417 40554143 ~ 40595325 (+)
LOC110487656 LOC106570121 coding upstream 111291 40430129 ~ 40521451 (+)
LOC110487657 LOC106570119 coding upstream 205891 40419859 ~ 40426851 (+)
LOC110511529 LOC106597731 coding upstream 253773 40377375 ~ 40378969 (+)
aqp10b LOC106570179 coding upstream 382279 40244662 ~ 40250463 (+)
LOC118946457 LOC106570127 coding downstream 159 40636889 ~ 40648487 (+)
nhe3b nhe3b coding downstream 178117 40814847 ~ 40885082 (+)
LOC110530849 LOC106569767 coding downstream 297381 40934111 ~ 40979367 (+)
tekt2 tekt2 coding downstream 343008 40979738 ~ 40991516 (+)
LOC110488463 NA coding downstream 376349 41013079 ~ 41013975 (+)
G2328540 NA non-coding upstream 14162 40615828 ~ 40618580 (+)
G2328516 NA non-coding upstream 47996 40500045 ~ 40584746 (+)
G2328506 NA non-coding upstream 118699 40513030 ~ 40514043 (+)
G2328389 NA non-coding upstream 300005 40332524 ~ 40332737 (+)
G2328385 NA non-coding upstream 303434 40329057 ~ 40329308 (+)
G2328605 NA non-coding downstream 12015 40648745 ~ 40651261 (+)
G2328613 NA non-coding downstream 16129 40652859 ~ 40654566 (+)
G2328617 NA non-coding downstream 23098 40659828 ~ 40660075 (+)
G2328618 NA non-coding downstream 23403 40660133 ~ 40660577 (+)
G2328898 NA non-coding downstream 137102 40773832 ~ 40774055 (+)
G2328139 NA other upstream 339422 40292895 ~ 40293320 (+)
G2328050 NA other upstream 490675 40139912 ~ 40142067 (+)
dpm3 dpm3 other upstream 972807 39656077 ~ 39659948 (+)
G2327475 NA other upstream 1077819 39547083 ~ 39554923 (+)
rps27.1 LOC106605923 other upstream 1233892 39396631 ~ 39398852 (+)
G2329181 LOC106588233 other downstream 565439 41202169 ~ 41210485 (+)

Expression

LOC118946456(LOC106570124) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC118946456(LOC106570124) Expression in each Bioproject

Bar chart with 21 bars.
LOC118946456(LOC106570124) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network