LOC110518971 (LOC106570128)


Basic Information

Item Value
gene id LOC110518971
gene name LOC106570128
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 40652557 ~ 40659632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970884.1
AGAGTTGTATAAATACTCAGTGAGCGTCTGTCAGTGTTGACTTACCGTAACATCACCACAGAGGATCTCTAAGGTGTATTGTCAGCAGATCACCATGAAGGTTGTCGCAGTAATCCTGGCTCTAGCAGTCCTCTCAGGCTGCCATGCATGGGTGCTACCCATGCAGGATGAGCCCCAAACTCCCTGGGAAAAGACAATTGACCAGTTTAAGGACTACATGACAGACCTGAACACTAAGGCTGATGAGAAGGTGAAGAACATCAGGGCCTCCCAtctcagcagagaactggaTACCCTGATCACAGACACCATGTCTGAGCTGAATATGTACAGTGATGATATGAAGACCAAACTGGGACCTCTCGCTAAGGACGCCGCTGAACGTCTGGGCAAGGAAGTGCAGCTCCTTGTTAACAAGTTGCAGGCTCACATGACTGAAGCTAAAGACCGTACCACAGTGTACACCCTGGAACTCCAGACCATGTTGGAGCAGAATGCCAATGACGTCAGTCACAGGGTCAACACCTATAGCCGCAAGCTGAACAAGCGCCTGAGCAAAGACACCCAGGAGATTTGCAGCAAAGTGACCACCTATTTCGAGGAGTTGCAGTCTCGAACCACCTCTGGTGTGGAATCCGTGATGGATCGCGTTGAGCCTTACTATGTCCAGATCCGTGAGCGCGCTGAGGATAAGATGGCTACCCTCAGCAAGCTGCTGGCGACCCAGGCTGAAAAGGTGAAGGACAAGCTTGAGTCCCGGGCTGAGGAGGTCCGCGAGCAGCTGGAGAAGACCACAGAGAACCTCCGCAGCAGCTTCGAGGACAAGACGGAGGAACTGCGCACCTGGTTCAACCCTTACGGCCTCATAATCCGTGATAAGGCTAAGGCCATCATGGAGACCATGTAAATCAACATACCACCATACAGGCTTAGGGTGGCGGTCTAGTTCACACACTATGTCACATATTTCACCCAAGCtaacaaatattttaaaaaaggGAAGGGAAGTTGCCTTTCAGAAAGCATTTAGTTTGTCACTCCATTCATAAACAAGACATAATGCATATTTGGCTGAGCACAGAGCTTTTCAGACTTGTAACAGGTTTCCAAGATCAACCAAACAAATCTACTTGTGTTaatatcctctctccctcattgTCATCCACCTCTACAAAAGGCACCGTTTCTCAAGCATAGCTGATAAAGTTCACTGAGATGCACACTCTAGCCATTACTGCTTAACATCAAAATGTATATTAGCGGTACAGAACAGTTGTGGTAGGGGAATTGTATAAAGGGCTTTGTGAGtaagtaataataaaaaaacatacattgGTGAAAGTCTGTCAATCCAATAAAAACATCTATACTAATC

Function

NR:

description
apolipoprotein Eb-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970884.1 True 1375 mRNA 0.47 6 40652557 40659632
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110511528 LOC106570118 coding downstream 288632 40343940 ~ 40363925 (-)
LOC118946520 LOC106570180 coding downstream 343060 40308202 ~ 40309497 (-)
LOC110488394 LOC106570116 coding downstream 369050 40269019 ~ 40283507 (-)
LOC110516488 LOC106570115 coding downstream 383677 40259404 ~ 40268880 (-)
cks1b LOC106570108 coding downstream 671978 39963657 ~ 39980579 (-)
LOC110531058 LOC106570129 coding upstream 18450 40678082 ~ 40723700 (-)
lipea lipe2 coding upstream 82173 40741805 ~ 40763730 (-)
usf2 LOC106569770 coding upstream 359840 41019276 ~ 41048657 (-)
LOC110488433 LOC106569773 coding upstream 466385 41126017 ~ 41137556 (-)
eppk1 LOC106598963 coding upstream 758915 41418547 ~ 41445133 (-)
G2328835 NA non-coding downstream 1533 40650643 ~ 40651024 (-)
G2328854 NA non-coding downstream 27031 40625156 ~ 40625526 (-)
G2328826 NA non-coding downstream 34804 40590714 ~ 40617753 (-)
G2328808 NA non-coding downstream 36880 40567097 ~ 40615677 (-)
G2328762 NA non-coding downstream 131129 40519642 ~ 40521428 (-)
G2328880 LOC106597055 non-coding upstream 70777 40730409 ~ 40731458 (-)
G2329330 NA non-coding upstream 313762 40973394 ~ 40979322 (-)
G2329431 NA non-coding upstream 481450 41141082 ~ 41142617 (-)
G2329463 NA non-coding upstream 509702 41169334 ~ 41170322 (-)
G2329427 NA non-coding upstream 546065 41205697 ~ 41208946 (-)
G2328836 NA other downstream 3135 40648804 ~ 40649422 (-)
G2328315 LOC106570114 other downstream 443826 40208053 ~ 40208731 (-)
G2328279 LOC106570112 other downstream 513373 40136592 ~ 40139184 (-)
G2328245 NA other downstream 569711 40082363 ~ 40082846 (-)
G2328215 NA other downstream 610589 40040012 ~ 40041968 (-)
G2329495 NA other upstream 594363 41253995 ~ 41257340 (-)
G2329999 NA other upstream 1109136 41768768 ~ 41769560 (-)

Expression

LOC110518971(LOC106570128) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5000.
End of interactive chart.

LOC110518971(LOC106570128) Expression in each Bioproject

Bar chart with 19 bars.
LOC110518971(LOC106570128) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150000.
End of interactive chart.

Co-expression Network