LOC110517827 (LOC106569776)


Basic Information

Item Value
gene id LOC110517827
gene name LOC106569776
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41202182 ~ 41208963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971412.1
GGGGACGACACCTTCAAAAACTGCCCATCCAACGTCAGACGGATAGAAAAGTAACATAGATAGAGGAGCAACAGCAGAGAGTTTACAGAGTTGGTTTGGATTGTTTGCAAGAAGTCTTACTCCCAGATACAGAGCATTCAACCCCACCCAACCTAATCATCGTCCAGCATGACCACAGCGAGTAGCTCAGGGCAAAGCTCATTTGGACTGAGCAGGAGGAAGAAGGCCCCTGGTCTGATGGATCAGATTAGCACTTTCTTTGGAGGCGACAAAAAGAAAGGGAGCAAGGGGTCCTTCCGGGGTCATGCCACCTCCCCCAAGCCAGCCCCTCGACGTCGGGCTAATGAGAATGCTGTAATGCATTTCTTCAGGAGCTTGAGCCCTCAGGCAACATCCTCTCCCCATCCCAAGTCCAGGTGGAGGAAGGTGTTGGGCTTGGCCACGCCACCGCGTGCTGATGCCACAAAGTCACCTCACAGACGCCGCAGAGACCAAGGAACACTGTCCAAAATCTTCAACCTGGAGACCAAGTCCCGCCCTCCTCCCAAACGCTGGAGCACCATCTTCTGAGCTGTCTTTAGatccaacagagagggaaaaGGATGAAGAAGAGAAATAATATATCCATTTGAAAAACTCATAACAACCCTCGACAACATTAGCACACTAACACCAGCCAGTCTCCTTTGTTTGTACATAGTGACACAATCTTGGCACCTAATATTTAGCCTGCTGGGATCACAATATGCAGTCTTTGAGTTCATCAATAGCCTTATAATCTTAGCTCTAAGGGAAAGTTCTTGTTTAGATGTATTTTTCATAGCTTTCAGATTTTTTTGGTAATGCTTCAAAATGATTCTACTGGCTCAAAGGGCTATTCACCTCATCCTAGCACCGTGTTCTAATGACGCTAGTGTCTGCTATCAATGGGTTGTTGTTCATGTTATGTGTTTTTCTATTTGTCTGCATTTTGTATCTGTTCTTCTATGCATAAAAATATGCTTTATATTCCCCTTTGCTGCTTTTAGGAGCTCACACAAAACGGTGTTTTGTTTTGTATGTTGCCATTGATGTGAAATCTAGTCTGATTAAGTGTTTGTGGGTCTTGTTATGCATGCAATAGTAAAACTTGTCTTGTGAAAAGTATTTCATGAATGCAGTGTTTTTGCATTTGAAAATGTAATGGGAAAAATACCTGTACAAATTATAAACTAACATTATGTAATATTCTATTGTAATATAACAACAATTACATTTGATTGGTTTAGTCATATTACGAAAATCTTGGTTAACTTATGCACTTAAATAATCAATGTTGTGTACTGTTATGTTGTCCATGCctaataaaacaacaacaaacaaatgcCCTT
>XM_036971413.1
GGGGACGACACCTTCAAAAACTGCCCATCCAACGTCAGACGGATAGAAAAGTAACATAGATAGAGGAGCAACAGCAGAGAGTTTACAGAGTTGGTTTGGATTGTTTGCAAGAAGTCTTACTCCCAGATACAGAGCATTCAACCCCACCCAACCTAATCATCGTCCAGCATGACCACAGCGAGTAGCTCAGGGCAAAGCTCATTTGGACTGAGCAGGAGGAAGAAGGCCCCTGGTCTGATGGATCAGATTAGCACTTTCTTTGGAGGCGACAAAAAGAAAGGGAGCAAGGGGTCCTTCCGGGGTCATGCCACCTCCCCCAAGCCAGCCCCTCGACGTCGGGCTAATGAGAATGCTGTAATGCATTTCTTCAGGAGCTTGAGCCCTCAGGCAACATCCTCTCCCCATCCCAAGTCCAGGGCCACGCCACCGCGTGCTGATGCCACAAAGTCACCTCACAGACGCCGCAGAGACCAAGGAACACTGTCCAAAATCTTCAACCTGGAGACCAAGTCCCGCCCTCCTCCCAAACGCTGGAGCACCATCTTCTGAGCTGTCTTTAGatccaacagagagggaaaaGGATGAAGAAGAGAAATAATATATCCATTTGAAAAACTCATAACAACCCTCGACAACATTAGCACACTAACACCAGCCAGTCTCCTTTGTTTGTACATAGTGACACAATCTTGGCACCTAATATTTAGCCTGCTGGGATCACAATATGCAGTCTTTGAGTTCATCAATAGCCTTATAATCTTAGCTCTAAGGGAAAGTTCTTGTTTAGATGTATTTTTCATAGCTTTCAGATTTTTTTGGTAATGCTTCAAAATGATTCTACTGGCTCAAAGGGCTATTCACCTCATCCTAGCACCGTGTTCTAATGACGCTAGTGTCTGCTATCAATGGGTTGTTGTTCATGTTATGTGTTTTTCTATTTGTCTGCATTTTGTATCTGTTCTTCTATGCATAAAAATATGCTTTATATTCCCCTTTGCTGCTTTTAGGAGCTCACACAAAACGGTGTTTTGTTTTGTATGTTGCCATTGATGTGAAATCTAGTCTGATTAAGTGTTTGTGGGTCTTGTTATGCATGCAATAGTAAAACTTGTCTTGTGAAAAGTATTTCATGAATGCAGTGTTTTTGCATTTGAAAATGTAATGGGAAAAATACCTGTACAAATTATAAACTAACATTATGTAATATTCTATTGTAATATAACAACAATTACATTTGATTGGTTTAGTCATATTACGAAAATCTTGGTTAACTTATGCACTTAAATAATCAATGTTGTGTACTGTTATGTTGTCCATGCctaataaaacaacaacaaacaaatgcCCTT
>XM_036971414.1
GGGGACGACACCTTCAAAAACTGCCCATCCAACGTCAGACGGATAGAAAAGTAACATAGATAGAGGAGCAACAGCAGAGAGTTTACAGAGTTGGTTTGGATTGTTTGCAAGAAGTCTTACTCCCAGATACAGAGCATTCAACCCCACCCAACCTAATCATCGTCCAGCATGACCACAGCGAGTAGCTCAGGGCAAAGCTCATTTGGACTGAGCAGGAGGAAGAAGGCCCCTGGTCTGATGGATCAGATTAGCACTTTCTTTGGAGGCGACAAAAAGAAAGGGAGCAAGGGGTCCTTCCGGGGTCATGCCACCTCCCCCAAGCCAGCCCCTCGACGTCGGGCTAATGAGAATGCTGTAATGCATTTCTTCAGGAGCTTGAGCCCTCAGGCAACATCCTCTCCCCATCCCAAGTCCAGGTGGAGGAAGGTGTTGGGCTTGGCCACGCCACCGCGTGCTGATGCCACAAAGTCACCTCACAGACGCCGCAGAGACCAAGGAACACTGTCCAAAATCTTCAACCTGTGGTGATATCATGAATCAGAGACCAAGTCCCGCCCTCCTCCCAAACGCTGGAGCACCATCTTCTGAGCTGTCTTTAGatccaacagagagggaaaaGGATGAAGAAGAGAAATAATATATCCATTTGAAAAACTCATAACAACCCTCGACAACATTAGCACACTAACACCAGCCAGTCTCCTTTGTTTGTACATAGTGACACAATCTTGGCACCTAATATTTAGCCTGCTGGGATCACAATATGCAGTCTTTGAGTTCATCAATAGCCTTATAATCTTAGCTCTAAGGGAAAGTTCTTGTTTAGATGTATTTTTCATAGCTTTCAGATTTTTTTGGTAATGCTTCAAAATGATTCTACTGGCTCAAAGGGCTATTCACCTCATCCTAGCACCGTGTTCTAATGACGCTAGTGTCTGCTATCAATGGGTTGTTGTTCATGTTATGTGTTTTTCTATTTGTCTGCATTTTGTATCTGTTCTTCTATGCATAAAAATATGCTTTATATTCCCCTTTGCTGCTTTTAGGAGCTCACACAAAACGGTGTTTTGTTTTGTATGTTGCCATTGATGTGAAATCTAGTCTGATTAAGTGTTTGTGGGTCTTGTTATGCATGCAATAGTAAAACTTGTCTTGTGAAAAGTATTTCATGAATGCAGTGTTTTTGCATTTGAAAATGTAATGGGAAAAATACCTGTACAAATTATAAACTAACATTATGTAATATTCTATTGTAATATAACAACAATTACATTTGATTGGTTTAGTCATATTACGAAAATCTTGGTTAACTTATGCACTTAAATAATCAATGTTGTGTACTGTTATGTTGTCCATGCctaataaaacaacaacaaacaaatgcCCTT
>XM_036971415.1
GGGGACGACACCTTCAAAAACTGCCCATCCAACGTCAGACGGATAGAAAAGTAACATAGATAGAGGAGCAACAGCAGAGAGTTTACAGAGTTGGTTTGGATTGTTTGCAAGAAGTCTTACTCCCAGATACAGAGCATTCAACCCCACCCAACCTAATCATCGTCCAGCATGACCACAGCGAGTAGCTCAGGGCAAAGCTCATTTGGACTGAGCAGGAGGAAGAAGGCCCCTGGTCTGATGGATCAGATTAGCACTTTCTTTGGAGGCGACAAAAAGAAAGGGAGCAAGGGGTCCTTCCGGGGTCATGCCACCTCCCCCAAGCCAGCCCCTCGACGTCGGGCTAATGAGAATGCTGTAATGCATTTCTTCAGGAGCTTGAGCCCTCAGGCAACATCCTCTCCCCATCCCAAGTCCAGGGCCACGCCACCGCGTGCTGATGCCACAAAGTCACCTCACAGACGCCGCAGAGACCAAGGAACACTGTCCAAAATCTTCAACCTGTGGTGATATCATGAATCAGAGACCAAGTCCCGCCCTCCTCCCAAACGCTGGAGCACCATCTTCTGAGCTGTCTTTAGatccaacagagagggaaaaGGATGAAGAAGAGAAATAATATATCCATTTGAAAAACTCATAACAACCCTCGACAACATTAGCACACTAACACCAGCCAGTCTCCTTTGTTTGTACATAGTGACACAATCTTGGCACCTAATATTTAGCCTGCTGGGATCACAATATGCAGTCTTTGAGTTCATCAATAGCCTTATAATCTTAGCTCTAAGGGAAAGTTCTTGTTTAGATGTATTTTTCATAGCTTTCAGATTTTTTTGGTAATGCTTCAAAATGATTCTACTGGCTCAAAGGGCTATTCACCTCATCCTAGCACCGTGTTCTAATGACGCTAGTGTCTGCTATCAATGGGTTGTTGTTCATGTTATGTGTTTTTCTATTTGTCTGCATTTTGTATCTGTTCTTCTATGCATAAAAATATGCTTTATATTCCCCTTTGCTGCTTTTAGGAGCTCACACAAAACGGTGTTTTGTTTTGTATGTTGCCATTGATGTGAAATCTAGTCTGATTAAGTGTTTGTGGGTCTTGTTATGCATGCAATAGTAAAACTTGTCTTGTGAAAAGTATTTCATGAATGCAGTGTTTTTGCATTTGAAAATGTAATGGGAAAAATACCTGTACAAATTATAAACTAACATTATGTAATATTCTATTGTAATATAACAACAATTACATTTGATTGGTTTAGTCATATTACGAAAATCTTGGTTAACTTATGCACTTAAATAATCAATGTTGTGTACTGTTATGTTGTCCATGCctaataaaacaacaacaaacaaatgcCCTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106569776 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971412.1 False 1370 mRNA 0.42 6 41202182 41208963
XM_036971413.1 False 1349 mRNA 0.42 5 41202182 41208963
XM_036971414.1 False 1388 mRNA 0.42 7 41202182 41208963
XM_036971415.1 True 1367 mRNA 0.42 6 41202182 41208963
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110518127 LOC106569775 coding upstream 15059 41168079 ~ 41187123 (+)
naxe naxe coding upstream 90061 41107045 ~ 41112121 (+)
LOC110514751 LOC106569771 coding upstream 104384 41070886 ~ 41097798 (+)
LOC110488463 NA coding upstream 188207 41013079 ~ 41013975 (+)
tekt2 tekt2 coding upstream 210666 40979738 ~ 40991516 (+)
LOC110517130 NA coding downstream 1222 41210185 ~ 41216073 (+)
LOC110496096 NA coding downstream 88687 41297650 ~ 41302622 (+)
LOC110496092 atp9b coding downstream 99800 41308110 ~ 41317115 (+)
LOC110496087 LOC106569777 coding downstream 122139 41331102 ~ 41397488 (+)
LOC110515899 LOC106569780 coding downstream 505122 41714085 ~ 41740315 (+)
G2329170 NA non-coding upstream 91649 41102580 ~ 41110533 (+)
G2329167 NA non-coding upstream 102474 41099313 ~ 41099708 (+)
LOC110530849 LOC106569767 non-coding upstream 222815 40934111 ~ 40979367 (+)
G2329087 NA non-coding upstream 244039 40954209 ~ 40958143 (+)
G2328916 NA non-coding upstream 417017 40784949 ~ 40785165 (+)
G2329503 NA non-coding downstream 60525 41269488 ~ 41269734 (+)
G2329523 NA non-coding downstream 77303 41286266 ~ 41286574 (+)
G2329535 NA non-coding downstream 84988 41293951 ~ 41294192 (+)
G2329538 NA non-coding downstream 86260 41295223 ~ 41295571 (+)
G2328139 NA other upstream 908862 40292895 ~ 40293320 (+)
G2328050 NA other upstream 1060115 40139912 ~ 40142067 (+)
dpm3 dpm3 other upstream 1542247 39656077 ~ 39659948 (+)
G2327475 NA other upstream 1647259 39547083 ~ 39554923 (+)
rps27.1 LOC106605923 other upstream 1803332 39396631 ~ 39398852 (+)

Expression

LOC110517827(LOC106569776) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1000.
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LOC110517827(LOC106569776) Expression in each Bioproject

Bar chart with 20 bars.
LOC110517827(LOC106569776) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
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Co-expression Network