G2287241


Basic Information

Item Value
gene id G2287241
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 310652 ~ 311552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2615349
CACTGAAGACTGACATTATAAATTTGGGTTGTATAACATTGATAGTAGGGTGCTAACATGTTGTGGGTAGATGGAAGGATTtatgtgcaaatgtatttgtagCCGGAGGCTAAGTATATACGGGGCATATGTTTGCGTAAGGGTGTTAGTTGCAGAGATAGTTTTGTCATTTCTATTGTCACTTTCAGTGAGGGGTTTGTCAAAGAAGATACAATGCTTGAAAAAATAACCACAGTTCCCTGTAAACAGGAGGCCACCTCACCAGAAGGGAAgttggctgtagtagtagtagcatcacaTCTCCTGCAGAGGGCGCCGAACGATAGGTGACCATTGCTGTACATTCATACCCCAGGGTGACTATTGTAGTGGAGCATCTGAAAGAGCTCAGCGGTGATCTCGCAAACGAACACCAACCAGACAACAATTGGAATCCGTTTGGATGGGTTCAGTCATTGTTTGGTGTTAGGGGGGCTACAAAATTTCATTGGTTGATTACATGTCTGATAAAGCTGATAATCCTGATCACCGAAAACACTGAATTAATGGTGCAGCATGTCCATAGGCCATGCTCATGGCGGGGGGGTTCTGTAAACGGTGCTCCCAAGGTAGTGTTAAGGGCCTACCGTCATGGTGACCCGTGGCAATGTGGACAGTGTCAACGAAGTGATTGCCTTGTGTGTGTGGTGATAAAGAATGTACTGATGTTTAACATTCATATGTTCCTTTCCCCCTTCTGAGAATGAATTGCACTATGTGAAGCTTTGAAACTCAATGACAACATTGTCATTTACGGGCTAAGTGTAAGAAAGTATTTCATTTTCCCTCTTTCCAAACCATGTTAGTGCTTGTTTGATGAAAATGATGTGCTTGTTTGATGAAAATGATGAAAATGATTCAA

Function

NR:

description
syncytin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2615349 True 901 lncRNA 0.43 1 310652 311552

Neighbor

gene id symbol gene type direction distance location
rpl30 LOC106589133 coding upstream 71084 233676 ~ 240640 (+)
LOC110489350 uk114 coding upstream 105135 175807 ~ 205517 (+)
stk3 stk3 coding upstream 136225 154976 ~ 174427 (+)
rnf19a LOC106570787 coding upstream 177259 79928 ~ 134719 (+)
LOC118946552 NA coding upstream 258505 52015 ~ 52147 (+)
spire1a LOC106589129 coding downstream 5351 316903 ~ 349528 (+)
psmg2 psmg2 coding downstream 164680 476232 ~ 482157 (+)
seh1l seh1l coding downstream 253572 565124 ~ 587159 (+)
rnmt rnmt coding downstream 285210 596762 ~ 616427 (+)
rims2b LOC106570772 coding downstream 427069 738621 ~ 899937 (+)
G2287242 NA non-coding upstream 359 309918 ~ 310293 (+)
G2287280 NA non-coding upstream 6651 303539 ~ 304001 (+)
G2287245 NA non-coding upstream 19674 273381 ~ 290978 (+)
G2287269 NA non-coding upstream 27156 265566 ~ 283496 (+)
G2287268 NA non-coding upstream 45773 264235 ~ 264879 (+)
G2287282 NA non-coding downstream 2883 314435 ~ 314634 (+)
G2287437 NA non-coding downstream 83509 395061 ~ 402253 (+)
G2287439 NA non-coding downstream 85635 397187 ~ 401790 (+)
G2287445 NA non-coding downstream 90791 402343 ~ 403679 (+)
G2287448 NA non-coding downstream 125196 436748 ~ 437227 (+)
G2287470 NA other downstream 175241 486793 ~ 487661 (+)
G2287973 NA other downstream 961822 1273374 ~ 1274170 (+)
triqk triqk other downstream 1897570 2209019 ~ 2255119 (+)
G2288669 NA other downstream 2010322 2321874 ~ 2324182 (+)
G2288814 NA other downstream 2068895 2380447 ~ 2381395 (+)

Expression


Co-expression Network