G2287470


Basic Information

Item Value
gene id G2287470
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 486793 ~ 487661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2615646
actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccattgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcaccatgaagaacaaggaacacaccaggcaggtccgagatattgttgtgaagaagtttaaagccggatttggttacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacac
>TU2615647
actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccattgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcaccatgaagaacaaggaacacaccaggcaggtccgagatattgttgtgaagaagtttaaagccggatttggttacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaacaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaa
>TU2615648
actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccattgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcaccatgaagaacaaggaacacaccaggcaggtccgagatattgttgtgaagaagtttaaagccggatttggttacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaacaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttc
>TU2615649
actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccattgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcaccatgaagaacaaggaacacaccaggcaggtccgagatattgttgtgaagaagtttaaagccggatttggttacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaacaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaacctgatggagtctgcaaaagacctgagactggga

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2615646 False 599 TUCP 0.44 1 486793 487391
TU2615647 False 690 TUCP 0.43 1 486793 487482
TU2615648 False 759 TUCP 0.44 1 486793 487551
TU2615649 True 869 TUCP 0.44 1 486793 487661

Neighbor

gene id symbol gene type direction distance location
psmg2 psmg2 coding upstream 4636 476232 ~ 482157 (+)
spire1a LOC106589129 coding upstream 137265 316903 ~ 349528 (+)
rpl30 LOC106589133 coding upstream 247225 233676 ~ 240640 (+)
LOC110489350 uk114 coding upstream 281276 175807 ~ 205517 (+)
stk3 stk3 coding upstream 312366 154976 ~ 174427 (+)
seh1l seh1l coding downstream 77463 565124 ~ 587159 (+)
rnmt rnmt coding downstream 109101 596762 ~ 616427 (+)
rims2b LOC106570772 coding downstream 250960 738621 ~ 899937 (+)
LOC110487806 LOC106570773 coding downstream 448661 936322 ~ 962116 (+)
ncaldb LOC105006551 coding downstream 793272 1280933 ~ 1361298 (+)
G2287469 NA non-coding upstream 188 485396 ~ 486605 (+)
G2287466 NA non-coding upstream 3336 483183 ~ 483457 (+)
G2287464 NA non-coding upstream 3902 482560 ~ 482891 (+)
G2287456 NA non-coding upstream 15158 471322 ~ 471635 (+)
G2287453 NA non-coding upstream 18206 468146 ~ 468587 (+)
G2287473 NA non-coding downstream 11733 499394 ~ 549250 (+)
G2287482 NA non-coding downstream 70244 557905 ~ 575122 (+)
G2287501 NA non-coding downstream 88755 576416 ~ 577121 (+)
G2287528 NA non-coding downstream 154612 642273 ~ 642542 (+)
G2287973 NA other downstream 785713 1273374 ~ 1274170 (+)
triqk triqk other downstream 1721461 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1834213 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1892786 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2572781 3060442 ~ 3060779 (+)

Expression


Co-expression Network