G2287482


Basic Information

Item Value
gene id G2287482
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 557905 ~ 575122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2615662
ctcctatagagctccatttttatggaatggtctgcctacccatgtgagagacgcagtctcaacctttaagtctttactgaagacttatctcttcagtaggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggctctggggCAACGAACCGCCGTCGCCGTCTCTGCCtgaccggttcccctctttccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctcttccatgccatccctaggaggggtgtgtgacttgagtaggttgagtcacttacgtgatcttcctgtctgggttggcgctcccccatgggttgtgccgtggcggagatctttgtgggctatactccgccttgtctcaggatggtaagttggtggttgaagatatccgtttagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccggggtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctttctctctctcggaggacctgagcctgaGGACatatgccccaggactacctgatatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttcaactgttctgccttattattattggaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttatattctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttggtttggtctggatctggagcagtgatactatatgtctggatcttgagcagtgatactatatgaCTGGATCTAGAACAGTGATACTATATG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2615662 True 1279 lncRNA 0.51 2 557905 575122

Neighbor

gene id symbol gene type direction distance location
psmg2 psmg2 coding upstream 75748 476232 ~ 482157 (+)
spire1a LOC106589129 coding upstream 208377 316903 ~ 349528 (+)
rpl30 LOC106589133 coding upstream 318337 233676 ~ 240640 (+)
LOC110489350 uk114 coding upstream 352388 175807 ~ 205517 (+)
stk3 stk3 coding upstream 383478 154976 ~ 174427 (+)
rnmt rnmt coding downstream 21640 596762 ~ 616427 (+)
rims2b LOC106570772 coding downstream 163499 738621 ~ 899937 (+)
LOC110487806 LOC106570773 coding downstream 361200 936322 ~ 962116 (+)
ncaldb LOC105006551 coding downstream 705811 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 1025228 1600350 ~ 1639573 (+)
G2287473 NA non-coding upstream 8655 499394 ~ 549250 (+)
G2287469 NA non-coding upstream 71300 485396 ~ 486605 (+)
G2287466 NA non-coding upstream 74448 483183 ~ 483457 (+)
G2287464 NA non-coding upstream 75014 482560 ~ 482891 (+)
G2287456 NA non-coding upstream 86270 471322 ~ 471635 (+)
G2287501 NA non-coding downstream 1294 576416 ~ 577121 (+)
seh1l seh1l non-coding downstream 10237 565124 ~ 587159 (+)
G2287528 NA non-coding downstream 67151 642273 ~ 642542 (+)
G2287529 NA non-coding downstream 71105 646227 ~ 647493 (+)
G2287532 NA non-coding downstream 74984 650106 ~ 650366 (+)
G2287470 NA other upstream 70244 486793 ~ 487661 (+)
G2287973 NA other downstream 698252 1273374 ~ 1274170 (+)
triqk triqk other downstream 1634000 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1746752 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1805325 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2485320 3060442 ~ 3060779 (+)

Expression


Co-expression Network