G2287548


Basic Information

Item Value
gene id G2287548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 720705 ~ 722692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2615738
GTGGAGAGAGTGGTGTAGCTTGTGAAAGAAATTGGTGTGGAGATGTAGGCATGTGGAGAGTGAATAGATGTGCCTATCTAGTGAAACAGGTTGGTGTTGAGAGCCTGGAGAGTTAGGCCTAGCTATTTAAAAACATTGGTGTGGAAAGTAAGGCCTAGCTAGTAAAACATGTTACTGTGGAGATTTAGGCCTAGCTATCAAAACAGGTTGGTGTGGAGAGTCAGGCCTAGCTATTGAATCATGTTAatatggagagagtggagagttagGCCTAGCTGGTGGAATGTGTTTATGTGGAGAGTTAGGCCTAGCTTGTGACATAACTTGCTGAGGAGAGAATGGAAAGTTACGCCTAGCTAATGAAGCAGGTCGGTGTGGAGAGAGTAGAGGGTTAGGCCTAGCTAGTGAAACATGTTGGAGTGGAGAGTTAGGCCTAGCTGGTGAAGTAGGTTGGTTTGGAGAGTTAGGCTTAGGTAGTGAAACATGTTGGTCTGGATAGTTTAGCCTAGATAGTGAAACAGCTTGGTGTGAAGAGAGATGAGAGTTAGGCCTAGAAAGTGAAACAGGTTGGTGTGGAGAGTTAGTAAAAACATTTAGTGTGGAGAGTTAGGACTAGCTAGCGAAACAGGTTGGTGTGGAGAGAGTGCAAAGTTAGTCCTAGCTAGTGAAACAGGTTGGCATTGAGATTTGGGTGTAGCTAGTGAAACAGGTTGGTTTGGAGAGCTAGGCATAGTTAGTGAAACAGTTCGTGGGCAGAGTTCGGCATGGCTAGTGAAAGGTTGGTTTGGAGAGTGTGAAGTGTTAGGCCTAGATAGTGAAACAGGTTGGTGTGGAGAGTGTGAAGATGTAGTCTTCGCTAGTGAAACATGTTGGTGTGGAGAGTTAGTAAAACATTTTAGTGTGGAGAGTTGGTTCTAGCTAGTGAAACAGGTTTTGTGGAGGAAGTGGAAAGTTACTCCTAGCTAGTGAAACAGCTTTGAGAGTTGGGTGTAGCTAGTGAAACAGGTTGGTGTAGAAAGTTGAGAGTTAGACCTAGCTAGTGAAACAGGTTTGTTTGGAGAGTTAGGCATGGCTAGTGAAAGGTTGGTGTTGAGAGTGTGGGAAGTTTGGCCTAGTTAGTGAAACAGGTTGGGGTGGAGATGTAGGCATGACTAGTGAAACGGATTGGTGTGGATAGAGTGGAGAGTTAGGCGTAGCTAGTGGAACAGGTTGGTGTGGAGGGAGTGGAAAGTTAGTCCTAGCTAGTGAAACAGGTTGGTAAGGAGAGTGTAGAGAGTTTAGCCTAGCTAATGAAAGGTTTGTGTGGAGAGTTAGGTCTCGCCCCCGttcggtcttggtcttgactctgACTTGATTTTCTCTGGTAgcatagtccgggtagccatttgattagctgttcaggagtcttaaggcttgggggtaaaagcatTTGAGAAGtattttggtcccagacttggtggtccggtatcgcttgccatgtggtagcagagagaacagtctatgactggggtggctggggtctttgacaatttttaggtccttcctctgacactgcctggtatagaggtcctggatggcaggcagtttagtcccagtgatgtactgggccgtaagcactaccctttgtagtgccttgcggtcagaggctcagcagttgctgtaccaggcagtgctgaccacgactccattttgttgatccctgcctacagacagaaactaaaacaagaggctcccacgctgaggtctgtccaacgctggtccgaccaagctgactccacactccaagactgcttccatcacgtggactgggagatgtttcgtattgcgtcagataacaacattgacgaatacgctgattcggtgtgcgagttcattagaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2615738 True 1880 lncRNA 0.47 2 720705 722692
Loading

Neighbor

gene id symbol gene type direction distance location
rnmt rnmt coding upstream 104278 596762 ~ 616427 (+)
seh1l seh1l coding upstream 133546 565124 ~ 587159 (+)
psmg2 psmg2 coding upstream 238548 476232 ~ 482157 (+)
spire1a LOC106589129 coding upstream 371177 316903 ~ 349528 (+)
rpl30 LOC106589133 coding upstream 481137 233676 ~ 240640 (+)
rims2b LOC106570772 coding downstream 15929 738621 ~ 899937 (+)
LOC110487806 LOC106570773 coding downstream 213630 936322 ~ 962116 (+)
ncaldb LOC105006551 coding downstream 558241 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 877658 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 988863 1711555 ~ 1825118 (+)
G2287547 NA non-coding upstream 7029 709505 ~ 713676 (+)
G2287545 NA non-coding upstream 12820 706453 ~ 707885 (+)
G2287543 NA non-coding upstream 22203 698236 ~ 698502 (+)
G2287542 NA non-coding upstream 23830 696612 ~ 696875 (+)
G2287539 NA non-coding upstream 30464 690041 ~ 690241 (+)
G2287597 NA non-coding downstream 94540 817232 ~ 832842 (+)
G2287845 NA non-coding downstream 248390 971082 ~ 971496 (+)
G2287905 NA non-coding downstream 290383 1013075 ~ 1013400 (+)
G2287930 NA non-coding downstream 319411 1042103 ~ 1042605 (+)
G2287932 NA non-coding downstream 321614 1044306 ~ 1057024 (+)
G2287470 NA other upstream 233044 486793 ~ 487661 (+)
G2287973 NA other downstream 550682 1273374 ~ 1274170 (+)
triqk triqk other downstream 1486430 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1599182 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1657755 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2337750 3060442 ~ 3060779 (+)

Expression

G2287548 Expression in all Baseline Samples

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G2287548 Expression in each Bioproject

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G2287548 Expression in each Sample
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Co-expression Network