G2287932


Basic Information

Item Value
gene id G2287932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1044306 ~ 1057024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616175
agatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacattttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgcgatttcttaaagtgtctataaagcactcaggacgggcccgaccgagacagggccttagtggggtgctcccatagcgggcaacaatgagaggggtgcctttaaattcattttgaaccatatttgaaattttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacggagagagaaaaaagtaatcatacc
>TU2616176
agatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatatatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacattttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgcgatttcttaaagtgtctataaagcactcaggacgggcccgaccgagacagggccttagtggggtgctcccatagcgggcaacaatgagaggggtgcctttaaattcattttgaaccatatttgaaattttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacggagagagaaaaaagtaatcatacc
>TU2616174
ggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgttttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtgaaaaaaaaaaaaattcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacggagagagaaaaaagtaatcatacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616175 False 1202 lncRNA 0.46 2 1044306 1057024
TU2616176 False 1202 lncRNA 0.46 2 1044306 1057024
TU2616174 True 486 lncRNA 0.46 2 1055857 1057024

Neighbor

gene id symbol gene type direction distance location
LOC110487806 LOC106570773 coding upstream 82190 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 144369 738621 ~ 899937 (+)
rnmt rnmt coding upstream 427879 596762 ~ 616427 (+)
seh1l seh1l coding upstream 457147 565124 ~ 587159 (+)
psmg2 psmg2 coding upstream 562149 476232 ~ 482157 (+)
ncaldb LOC105006551 coding downstream 223909 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 543326 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 654531 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 792436 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 835566 1892590 ~ 1893952 (+)
G2287930 NA non-coding upstream 1701 1042103 ~ 1042605 (+)
G2287905 NA non-coding upstream 30906 1013075 ~ 1013400 (+)
G2287845 NA non-coding upstream 72810 971082 ~ 971496 (+)
G2287597 NA non-coding upstream 211464 817232 ~ 832842 (+)
G2287548 NA non-coding upstream 321614 720705 ~ 722692 (+)
G2287935 NA non-coding downstream 7067 1064091 ~ 1084625 (+)
G2287936 NA non-coding downstream 29339 1086363 ~ 1231978 (+)
G2287937 NA non-coding downstream 39352 1096376 ~ 1097137 (+)
G2287940 NA non-coding downstream 59977 1117001 ~ 1217046 (+)
G2287942 NA non-coding downstream 139734 1196758 ~ 1221378 (+)
G2287470 NA other upstream 556645 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 803666 233676 ~ 240640 (+)
G2287973 NA other downstream 216350 1273374 ~ 1274170 (+)
triqk triqk other downstream 1152098 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1264850 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1323423 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2003418 3060442 ~ 3060779 (+)

Expression


Co-expression Network