XLOC_004173 (BX601648.1)


Basic Information

Item Value
gene id XLOC_004173
gene name BX601648.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27783758 ~ 27806767 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007976
TTAGAACGCGTTCCAATGGAATACTTTAAGCTGTGCAGCTCAGataatttttttgttggtttGTAGAAGTGGCGGTTGGTCGATATTTCACAACGGATAGCAATTGTTTTAtcaaaatgtcttgttttctCTTCAGACGAAAGAACCCCATGaaggaaacacttgaggTTGATTTAGAGATGGAGGAGAAAAAGAGGCAGAAGGAGGAGAAAAGGAAGGAGAAAGAggagaaaaagaggaagaaagaggagagaaagaagaaaaggtgCCGGATCGGCTCCTTTTTTAAAGCGTTGTTCTGCTTCACTCTGGATgtggaggaggaggaaaagaagGAAAATGAGAACATAATGGTggtggaggtggaggaggagaaaAATTCAGATTCAAAATCATCCTCCATTCCAGCAGACCAAGCCACTGATGaTGATCAAGAGGAGATCAtgcaggaggaagaggagaaagTTGAGGAAGAGGAGGTGAAAATGGtggagaaaaagaaaaggaagacTAGACGAGGGAGGAGAGGAAGGAACAAAAAGAAAGAGGAGGCAATGgaggaggaggacaatAGAATTGAGGAAGAAGAGGAGATGAAGGAGGCAATGGTAGAGGAGGAGAAGAAAACTACAATgaaagagaaggaggaggaggaaatgGATACAACTGAGATGGTGGAGAAGAAGATGGCAGAGGTGAACaccgaggaggaggaggaggacaatAGAATTGAGGAAGAAGAGGAGATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007976 True 750 lncRNA 0.44 7 27783758 27806767

Neighbor

gene id symbol gene type direction distance location
XLOC_004172 cass4 coding downstream 4927 27745618 ~ 27778831 (-)
XLOC_004171 fam120a coding downstream 44709 27705030 ~ 27739049 (-)
XLOC_004170 phf2 coding downstream 80923 27644524 ~ 27702835 (-)
XLOC_004169 NA coding downstream 158293 27543578 ~ 27625465 (-)
XLOC_004168 ptpdc1a coding downstream 246097 27511277 ~ 27537661 (-)
XLOC_004175 cstf1 coding upstream 10534 27817301 ~ 27827533 (-)
XLOC_004176 eif4g3a coding upstream 21445 27828212 ~ 27917730 (-)
XLOC_004177 ece1 coding upstream 112935 27919702 ~ 28050559 (-)
XLOC_004178 si:ch211-220m17.4 coding upstream 245932 28052699 ~ 28086924 (-)
XLOC_004179 lactbl1b coding upstream 320432 28127199 ~ 28390101 (-)
XLOC_004063 CR854846.1 misc downstream 11656080 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15092067 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15161991 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15192462 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15270496 12512966 ~ 12513262 (-)
XLOC_004167 NA non-coding downstream 275785 27502205 ~ 27507973 (-)
XLOC_004165 CR847934.1 non-coding downstream 1035329 26748292 ~ 26748429 (-)
XLOC_004152 CR933820.1 non-coding downstream 2113803 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2306778 25475305 ~ 25476980 (-)
XLOC_004180 NA non-coding upstream 390190 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 612109 28418876 ~ 28424141 (-)
XLOC_004182 NA non-coding upstream 706975 28513742 ~ 28522344 (-)
XLOC_004183 BX649345.1 non-coding upstream 715597 28522364 ~ 28525496 (-)
XLOC_004187 NA non-coding upstream 1278599 29085366 ~ 29088626 (-)

Expression


Co-expression Network