G2287974


Basic Information

Item Value
gene id G2287974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1274575 ~ 1275361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616272
ccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaactgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgcccctcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcactgtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgttctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaagg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616272 True 787 lncRNA 0.44 1 1274575 1275361

Neighbor

gene id symbol gene type direction distance location
LOC110487806 LOC106570773 coding upstream 312459 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 374638 738621 ~ 899937 (+)
rnmt rnmt coding upstream 658148 596762 ~ 616427 (+)
seh1l seh1l coding upstream 687416 565124 ~ 587159 (+)
psmg2 psmg2 coding upstream 792418 476232 ~ 482157 (+)
ncaldb LOC105006551 coding downstream 5572 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 324989 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 436194 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 574099 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 617229 1892590 ~ 1893952 (+)
G2287954 NA non-coding upstream 40352 1233466 ~ 1234223 (+)
G2287953 NA non-coding upstream 41267 1232853 ~ 1233308 (+)
G2287936 NA non-coding upstream 42597 1086363 ~ 1231978 (+)
G2288015 NA non-coding downstream 54910 1330271 ~ 1334705 (+)
G2287981 NA non-coding downstream 87761 1363122 ~ 1369617 (+)
G2288035 NA non-coding downstream 112663 1388024 ~ 1389265 (+)
G2288040 NA non-coding downstream 119175 1394536 ~ 1400935 (+)
G2288041 NA non-coding downstream 119565 1394926 ~ 1404696 (+)
G2287973 NA other upstream 405 1273374 ~ 1274170 (+)
G2287470 NA other upstream 786914 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1033935 233676 ~ 240640 (+)
triqk triqk other downstream 933761 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1046513 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1105086 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1785081 3060442 ~ 3060779 (+)
G2290395 NA other downstream 3173528 4448889 ~ 4449571 (+)

Expression


Co-expression Network