G2287981


Basic Information

Item Value
gene id G2287981
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1363122 ~ 1369617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616294
agctttgcacactcatggcattctctcaaccagcttcacctggattgcttttccaacagtataacgacacaaggcgagacccagatgcagacacgagaggcagatggtttgagctctgatatttattatagtccaaggggtaggcaaaaggcaggtcggggacaggcaaGCGTTAATatccaggtcagagtccaaaacggtacatggcagcaggcaggctcaaggtcaggggcaggcagaatggtcaaaaggcaggtcggggacaggcaagcgttaggacaggcaagggtcagaaccaggaggatgagaaaaacagagactgggaagAACTACTGGctggaaaaacgctggttgacatGACAatcaagacgaactggcacagacagacagaaaacacaggtataaatacacaggggatcaTGGGGAAGAtgtgtgacacctggaggggggtagagacaagcacaaggactggtgaaacagatcagggtgggtCAGTACCCCCCCTCTAGGGGCGCCACCTATTATCCTGCCTGGGCGCATGCCTGGTTGACCGGGTTGTCGGCGGTGGAAGTCGGCAATGAgggctgggtccaggatgtctctagcgagacccagcacctctcctccgggccgtaACCCTCTCAGTCATCTAGGTACTGGAAACCCCAGCCCCGTGGTCGAACACTCAGGAGGCATCTCACCGTGTATGGCCATCGATGACACGGGGGGTGGGGTGGACctggaaacagaagacaaagggCTCTCTGTCTTGCTTAAATGGCCCTTACACATGcttgaggtgtgttgggtcattgtcctgttgaaaaaccaatTATAgccccactaagcccaaaccagatgggattgcgttttgctgcagaatgctgtggtagccatgatggttaagtgtgccttgaattctaaatatatcactgacagtgtcaccaacaaagcagcTGCACaccatctcacctcctcctccatgcttcactgtgggaaccacacatgcagagatcatccgttcacctactctgcgtctcacaaagacacggcggatggaaccaaaaaatctctatttggactcatcagaacaatggacagatttccaccgtttgaatatccattgctcatgtttcttggcccaagacagtctcttcttattattggtgtcctttaatagtggtttctttgcagcgattcgaccatgaaggcatgattcatgcagtcttctccgaacagttgatgttgagatgtggtTAAGTGTgctagaattcaaggcacacaaccagcatggctaccacagcattctgcagcgatacgccattccatctggttagTGGGATTATAATTTGTTTTTACAACACGACAGGCTGTGTAAGAACTATTTGAGCAAGAATGAgagtgacctggcctccacaatcaccagaactcaacccaattgagatggtttgggatgagttaaaCTATAGAATGaacgaaaagcagccaacaagtgctcggcatatgtgggaactccttcaagactgttggaaaaccattacaggtgaagctggttggagagaatgccaagagtgtgcaaagctgttatcaaggcaaagggtggctactttgaggaatctaaattctaaaaaatatttggatttgtttaacacttttttttggtaactacatgattccatatgtgttatttcatagttttgatgatgtcttcactattattctacaatgtagaaaatagtaaaaataaataaaaacccttgaatgaggtgatgtgtccaaacttttgactggtactgtatttatatatttgtatttatatcaCTACATAATATTATGGTATGGATACATATACATTTGTATATGTATTACTACATAATATTACGGTATGTCTAGATATATATATGACCTGGCctcagttgaagttggaagttgacatacacttaggttggagtcattaaaactagtttttcaaccactccacaaatgtcttcttaacaaactatagttttggcaagttggttaggacatctactttgtgcatgacacaagtcatttttccaacaattgtttacagacagattatttcactaaaaattcactgtatcacaattccagtgggtaagaagtttacatacactaagttgactgtgcctttaaacagtttgaaaaattccagaaaattatgtcatggctttagaagtttctgataggctgattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactctgccTCGTTGctcgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaataagattgtagacctccacaagtctggttcatcattgggagcaatttccaaacgtctgaaggtaccacgttcatctctacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgacataccgctcaggaaggagacgcgttctgtctcctagagattaacttactttggtgcgaaaagtgctaatcaatcccagaacaacatcaaaggatcttgtgaagatgctggaggaaacaggtacaaagtatctatttccacagtaaaacgagtcctatatcgacataacctgaaaggccgctcagcaaggaagaagccattgctccaaaaccaccataaaaaagccagactactgtttgcaactgcacatgggcacaaagatcatacattttggagaaatgtcctctagtctgatgaaacaaaaatggaactgtatGGCCATAATGATCGTcattctgtttggaggaaaaagagggaggcttgcaagccaaagaacaccatcccaaccgtaaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcataaaatagatggcttcacgaggatgaaaattacgtggatatttagaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggctcaaggtcaacaaagtcaatgtattggagtggccatcccaaaggcctgacctcaatcctatagaaaatttgtggacagaactgaaaaagtgtgtgcgagcaaggaggcctaccaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcatcccaaaattcacccagctacCCAAAACAcatgacccaagtgaaacaattgaAAAGCAATggtaccaagtactaattgagtgtatgtaaacttctgacctcctgggaatgtgatgaaagaaataaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaattcacctaaaacagggaatctttactaggaataaatgtcaggaattgtgaagaactgagtttaaatgtagttggctaaggtgtatgtaaacttccgacttcaactgtacatatatatatatatatatatatattccaaatAACATATGACCATAATATTATGTACTAAAGCACACAACGTATCCCCTTAACCCACTAAAATGCATGAGAACAGTAGGGAACTATACCCCTGATAACTTTGGTAACCCACTCCATACTcgaatagagagaaggagagctgtcTGTTCTGTCCCTGATCATGGCTTCAGGCTCTCCCAGATACCCAGGGCCGATGGAAGAATAAACCCACCACCTGCAGGACTGGTTATTATACAGtactgtatacatccaccacctacagtactgaatacaTCCACCatctgcagtactgaatacatCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGGGCTGGTTATTATACACCACTGAATGTTTTTTGAGCTGCTGTTAGCTATGTAAATAAGATAAGAACAGGAGGTTTGATTAAATGGTTTGAGGTACAAGACGGGAGGATTCTTTTTGCATTGTAAGACCAtttcagtcaagttcttccacactggtctcgacaaaccatttctgtttggaccactctttgtgcacaggggcattgttatgctaaaacaggaaagcgATTTTCCCAAACTGTCGCCTCAAAGTTGGAAGCCCAGAATCGTCTGGAAtgtttgtatgctgtagcattgcatgctgtagcattaagatgtcCTTTCACtcgaactaaggggcctagcccaaaccacgaaaagcagccccagaccattattcatcctccaccaaactttacagttggctctatgcattcgggcaggtagcgttatcctggaatccgccaaacccagattagtccgtcggactgacAAATGGTGAAGCGTGACTTATATCTCCAGAGAACGcttctccactgctccagagtccaatggcggctagctttacaccactccagctgacgcttggcatttcccatggtgatcttaggcttgtgtgcggctgttcagccatgtaaacccatttcattaagctctcGACGAACTGTCCttttgctgacgttgcttccagaagtaGTTTGGAACTCGCTAGTGAGTGTTACGACCGAGGACCGACTATTTTTAAcatgctacacgcttcagcactcggcagtctcgttctgtgagcttgtgtggcctatcacttggCGGCTTTGCCGTTGTTGCTCCCAGagatttccacttcacaatatcagcacttacagatgaccggggcagctctagcagggcagacatttgattaACTGActcgttggaaaggtggcatcctatgacggtgccacattgaaagtcactgagctcatcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgcttgatgtACACTTGTTAGcaacgggtgttgctgaaatagccaaatccactaatttgaaggggtgtccacatacttttgtatatatagtgtgtatatacaaaaaaaaatgtattgtatcaATTTATCCTATACAATTGTTATCTGTCGAACAAACTGTTTGTCATTGTATAATTTTgtagatttgttattgttactttGTTGCAATATGTGTCAGAGTAGTGTCTAAATACAGAAAGTATTTATGTTTTGATTATCTtataaagaaa
>TU2616281
atctactttgtgcatgacacaagtcatttttccaacaattgtttacagacagattatttcactaaaaattcactgtatcacaattccagtgggtaagaagtttacatacactaagttgactgtgcctttaaacagtttgaaaaattccagaaaattatgtcatggctttagaagtttctgataggctgattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactctgccTCGTTGctcgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaataagattgtagacctccacaagtctggttcatcattgggagcaatttccaaacgtctgaaggtaccacgttcatctctacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgacataccgctcaggaaggagacgcgttctgtctcctagagattaacttactttggtgcgaaaagtgctaatcaatcccagaacaacatcaaaggatcttgtgaagatgctggaggaaacaggtacaaagtatctatttccacagtaaaacgagtcctatatcgacataacctgaaaggccgctcagcaaggaagaagccattgctccaaaaccaccataaaaaagccagactactgtttgcaactgcacatgggcacaaagatcatacattttggagaaatgtcctctagtctgatgaaacaaaaatggaactgtatGGCCATAATGATCGTcattctgtttggaggaaaaagagggaggcttgcaagccaaagaacaccatcccaaccgtaaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcataaaatagatggcttcacgaggatgaaaattacgtggatatttagaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggctcaaggtcaacaaagtcaatgtattggagtggccatcccaaaggcctgacctcaatcctatagaaaatttgtggacagaactgaaaaagtgtgtgcgagcaaggaggcctaccaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcatcccaaaattcacccagctacCCAAAACAcatgacccaagtgaaacaattgaAAAGCAATggtaccaagtactaattgagtgtatgtaaacttctgacctcctgggaatgtgatgaaagaaataaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaattcacctaaaacagggaatctttactaggaataaatgtcaggaattgtgaagaactgagtttaaatgtagttggctaaggtgtatgtaaacttccgacttcaactgtacatatatatatatatatatatatattccaaatAACATATGACCATAATATTATGTACTAAAGCACACAACGTATCCCCTTAACCCACTAAAATGCATGAGAACAGTAGGGAACTATACCCCTGATAACTTTGGTAACCCACTCCATACTcgaatagagagaaggagagctgtcTGTTCTGTCCCTGATCATGGCTTCAGGCTCTCCCAGATACCCAGGGCCGATGGAAGAATAAACCCACCACCTGCAGGACTGGTTATTATACAGtactgtatacatccaccacctacagtactgaatacaTCCACCatctgcagtactgaatacatCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGGGCTGAATACATCCACCACCTgcagggctggttataatacagtactgAATAGATCCACCACCTGCAGGGCTGAATACATCCATCACCTGGAGTACTGAATACATCCACCACTTGCAGGGCTGGTTATTATACATTACTGTATACATCCACCAACTGCAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCTGCAGGGCTGGTTATTATACAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTTCAGTACTGAATACATCCACCACCTGCAGTATTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTGCAGGGCTGGTTATTATACCATACTGAATACATCCACCACCTGCAGTATTGAATACATCCGCCACCTGCAGTACTGAATACATCCACCACCTGCAGGGCTGGTTATTATACAGTACTGAATACATCCACCACCTGCAGTATTGAATACATCCGCCACCTGCAGTACTGAATTTATCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGTATTGAATACATCCGCCACCTGCAGTACTGAATACATCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTGCAGTATTGAATACATCCGCCACCTGCAGTACTGAATACATCCACCACCTGCAGGGCTGGTTATTATACACCACTGAATGTTTTTTGAGCTGCTGTTAGCTATGTAAATAAGATAAGAACAGGAGGTTTGATTAAATGGTTTGAGGTACAAGACGGGAGGATTCTTTTTGCATTGTAAGACCAtttcagtcaagttcttccacactggtctcgacaaaccatttctgtttggaccactctttgtgcacaggggcattgttatgctaaaacaggaaagcgATTTTCCCAAACTGTCGCCTCAAAGTTGGAAGCCCAGAATCGTCTGGAAtgtttgtatgctgtagcattgcatgctgtagcattaagatgtcCTTTCACtcgaactaaggggcctagcccaaaccacgaaaagcagccccagaccattattcatcctccaccaaactttacagttggctctatgcattcgggcaggtagcgttatcctggaatccgccaaacccagattagtccgtcggactgacAAATGGTGAAGCGTGACTTATATCTCCAGAGAACGcttctccactgctccagagtccaatggcggctagctttacaccactccagctgacgcttggcatttcccatggtgatcttaggcttgtgtgcggctgttcagccatgtaaacccatttcattaagctctcGACGAACTGTCCttttgctgacgttgcttccagaagtaGTTTGGAACTCGCTAGTGAGTGTTACGACCGAGGACCGACTATTTTTAAcatgctacacgcttcagcactcggcagtctcgttctgtgagcttgtgtggcctatcacttggCGGCTTTGCCGTTGTTGCTCCCAGagatttccacttcacaatatcagcacttacagatgaccggggcagctctagcagggcagacatttgattaACTGActcgttggaaaggtggcatcctatgacggtgccacattgaaagtcactgagctcatcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgcttgatgtACACTTGTTAGcaacgggtgttgctgaaatagccaaatccactaatttgaaggggtgtccacatacttttgtatatatagtgtgtatatacaaaaaaaaatgtattgtatcaATTTATCCTATACAATTGT
>TU2616292
atctactttgtgcatgacacaagtcatttttccaacaattgtttacagacagattatttcactaaaaattcactgtatcacaattccagtgggtaagaagtttacatacactaagttgactgtgcctttaaacagtttgaaaaattccagaaaattatgtcatggctttagaagtttctgataggctgattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactctgccTCGTTGctcgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaataagattgtagacctccacaagtctggttcatcattgggagcaatttccaaacgtctgaaggtaccacgttcatctctacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgacataccgctcaggaaggagacgcgttctgtctcctagagattaacttactttggtgcgaaaagtgctaatcaatcccagaacaacatcaaaggatcttgtgaagatgctggaggaaacaggtacaaagtatctatttccacagtaaaacgagtcctatatcgacataacctgaaaggccgctcagcaaggaagaagccattgctccaaaaccaccataaaaaagccagactactgtttgcaactgcacatgggcacaaagatcatacattttggagaaatgtcctctagtctgatgaaacaaaaatggaactgtatGGCCATAATGATCGTcattctgtttggaggaaaaagagggaggcttgcaagccaaagaacaccatcccaaccgtaaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcataaaatagatggcttcacgaggatgaaaattacgtggatatttagaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggctcaaggtcaacaaagtcaatgtattggagtggccatcccaaaggcctgacctcaatcctatagaaaatttgtggacagaactgaaaaagtgtgtgcgagcaaggaggcctaccaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcatcccaaaattcacccagctacCCAAAACAcatgacccaagtgaaacaattgaAAAGCAATggtaccaagtactaattgagtgtatgtaaacttctgacctcctgggaatgtgatgaaagaaataaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaattcacctaaaacagggaatctttactaggaataaatgtcaggaattgtgaagaactgagtttaaatgtagttggctaaggtgtatgtaaacttccgacttcaactgtacatatatatatatatatatatatattccaaatAACATATGACCATAATATTATGTACTAAAGCACACAACGTATCCCCTTAACCCACTAAAATGCATGAGAACAGTAGGGAACTATACCCCTGATAACTTTGGTAACCCACTCCATACTcgaatagagagaaggagagctgtcTGTTCTGTCCCTGATCATGGCTTCAGGCTCTCCCAGATACCCAGGGCCGATGGAAGAATAAACCCACCACCTGCAGGACTGGTTATTATACAGtactgtatacatccaccacctacagtactgaatacaTCCACCatctgcagtactgaatacatCCACCACCTGCAGGGCTGAATACATCCACCACCTGCAGGGCTGAATACATCCACCACCTgcagggctggttataatacagtactgAATAGATCCACCACCTGCAGGGCTGAATACATCCATCACCTGGAGTACTGAATACATACACCACTTGCAAGGTTGGTTATTATACATtactgtatacatccaccaccTGCAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCACCTgcagggctggttataatacagtactgAATAGATCCACCACCTGCAAGGCTGAATACATCCATCACCTGGAGTACTGAATACATCCACCACTTGCAGGGCTGGTTATTATACATTACTGTATACATCCACCAACTGCAGTACTGAATACATCCACCACCTGCAGTACTGAATACATCCACCTGCAGGGCTGGTTATTATACAGTACTGAATACATCCACCACCTGCAGTATTGAATACATCCGCCACCTGCAGTACTGAATACATCCACCACCTGCAGGGCTGGTTATTATACACCACTGAATGTTTTTTGAGCTGCTGTTAGCTATGTAAATAAGATAAGAACAGGAGGTTTGATTAAATGGTTTGAGGTACAAGACGGGAGGATTCTTTTTGCATTGTAAGACCAtttcagtcaagttcttccacactggtctcgacaaaccatttctgtttggaccactctttgtgcacaggggcattgttatgctaaaacaggaaagcgATTTTCCCAAACTGTCGCCTCAAAGTTGGAAGCCCAGAATCGTCTGGAAtgtttgtatgctgtagcattgcatgctgtagcattaagatgtcCTTTCACtcgaactaaggggcctagcccaaaccacgaaaagcagccccagaccattattcatcctccaccaaactttacagttggctctatgcattcgggcaggtagcgttatcctggaatccgccaaacccagattagtccgtcggactgacAAATGGTGAAGCGTGACTTATATCTCCAGAGAACGcttctccactgctccagagtccaatggcggctagctttacaccactccagctgacgcttggcatttcccatggtgatcttaggcttgtgtgcggctgttcagccatgtaaacccatttcattaagctctcGACGAACTGTCCttttgctgacgttgcttccagaagtaGTTTGGAACTCGCTAGTGAGTGTTACGACCGAGGACCGACTATTTTTAAcatgctacacgcttcagcactcggcagtctcgttctgtgagcttgtgtggcctatcacttggCGGCTTTGCCGTTGTTGCTCCCAGagatttccacttcacaatatcagcacttacagatgaccggggcagctctagcagggcagacatttgattaACTGActcgttggaaaggtggcatcctatgacggtgccacattgaaagtcactgagctcatcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgcttgatgtACACTTGTTAGcaacgggtgttgctgaaatagccaaatccactaatttgaaggggtgtccacatacttttgtatatatagtgtgtatatacaaaaaaaaatgtattgtatcaATTTATCCTATACAATTGTTATCTGTCGAACAAACTGTTTGTCATTGTATAATTTTgtagatttgttattgttactttGTTGCAATATGTGTCAGAGTAGTGTCTAAATACAGAAAGTATTTATGTTTTGATTATCTtataaagaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616294 False 5188 lncRNA 0.43 2 1363122 1369617
TU2616281 False 3766 lncRNA 0.44 4 1365148 1369489
TU2616292 True 3619 lncRNA 0.43 2 1365148 1369617

Neighbor

gene id symbol gene type direction distance location
ncaldb LOC105006551 coding upstream 1824 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 401006 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 463185 738621 ~ 899937 (+)
rnmt rnmt coding upstream 746695 596762 ~ 616427 (+)
seh1l seh1l coding upstream 775963 565124 ~ 587159 (+)
LOC110511936 spire1 coding downstream 230733 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 341938 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 479843 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 522973 1892590 ~ 1893952 (+)
triqk triqk coding downstream 839402 2209019 ~ 2255119 (+)
G2288015 NA non-coding upstream 28417 1330271 ~ 1334705 (+)
G2287974 NA non-coding upstream 87761 1274575 ~ 1275361 (+)
G2287954 NA non-coding upstream 128899 1233466 ~ 1234223 (+)
G2287953 NA non-coding upstream 129814 1232853 ~ 1233308 (+)
G2287942 NA non-coding upstream 141744 1196758 ~ 1221378 (+)
G2288035 NA non-coding downstream 18407 1388024 ~ 1389265 (+)
G2288040 NA non-coding downstream 24919 1394536 ~ 1400935 (+)
G2288041 NA non-coding downstream 25309 1394926 ~ 1404696 (+)
G2288042 NA non-coding downstream 25853 1395470 ~ 1399949 (+)
G2288073 NA non-coding downstream 72304 1441921 ~ 1442688 (+)
G2287973 NA other upstream 88952 1273374 ~ 1274170 (+)
G2287470 NA other upstream 875461 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1122482 233676 ~ 240640 (+)
G2288669 NA other downstream 952257 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1010830 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1690825 3060442 ~ 3060779 (+)
G2290395 NA other downstream 3079272 4448889 ~ 4449571 (+)

Expression


Co-expression Network