G2288040


Basic Information

Item Value
gene id G2288040
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1394536 ~ 1400935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616369
aagttaaccaaggcatcgttagaccatatcagattgttgctaagttaaccaaggcatcgttagcccatatcagatcattgataagttaaccaaggcatcattagaccatatcagatcattgataacttaaccaaggcatcgttagaccatatcagatcattgataagttaaccaaggcatcgttagaaCATATCAGATAATTGATAAGTTAACAAAGGCATCGTTAGACAatatcagatcattgataagttaaACAAGgcatcgttagaccgATAATGTATCAGATCTTTCATAAGTTAACCTTGTCACCAttagaccatatcagatcattgataagttaaccaaggcattgTTAGACCGTATCAGATcgttgataagttaaccaaggcatcgttagaccatatcagatcattgataagttaaccaaggcatcgttagaccatatcagatcattgataatttaaccaaggcatcgttagaccatatcagatcattgataagttaaccaaggcatcgttagaccatatcagatcgttgataagttaaccaaggcatccttagaccatatcagatcattgataagttaaccaaggcatcgatagaccatatcagatcattgataatttaaccaaggcatcgttagaccatatcagataATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616369 True 661 lncRNA 0.36 3 1394536 1400935

Neighbor

gene id symbol gene type direction distance location
ncaldb LOC105006551 coding upstream 33238 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 432420 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 494599 738621 ~ 899937 (+)
rnmt rnmt coding upstream 778109 596762 ~ 616427 (+)
seh1l seh1l coding upstream 807377 565124 ~ 587159 (+)
LOC110511936 spire1 coding downstream 199415 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 310620 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 448525 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 491655 1892590 ~ 1893952 (+)
triqk triqk coding downstream 808084 2209019 ~ 2255119 (+)
G2288035 NA non-coding upstream 5271 1388024 ~ 1389265 (+)
G2287981 NA non-coding upstream 24919 1363122 ~ 1369617 (+)
G2288015 NA non-coding upstream 59831 1330271 ~ 1334705 (+)
G2287974 NA non-coding upstream 119175 1274575 ~ 1275361 (+)
G2287954 NA non-coding upstream 160313 1233466 ~ 1234223 (+)
G2288073 NA non-coding downstream 40986 1441921 ~ 1442688 (+)
G2288090 NA non-coding downstream 70508 1471443 ~ 1471657 (+)
G2288159 NA non-coding downstream 71030 1471965 ~ 1472169 (+)
G2288169 NA non-coding downstream 88757 1489692 ~ 1491162 (+)
G2288175 NA non-coding downstream 95172 1496107 ~ 1496390 (+)
G2287973 NA other upstream 120366 1273374 ~ 1274170 (+)
G2287470 NA other upstream 906875 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1153896 233676 ~ 240640 (+)
G2288669 NA other downstream 920939 2321874 ~ 2324182 (+)
G2288814 NA other downstream 979512 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1659507 3060442 ~ 3060779 (+)
G2290395 NA other downstream 3047954 4448889 ~ 4449571 (+)

Expression


Co-expression Network