G2288193


Basic Information

Item Value
gene id G2288193
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1537350 ~ 1561122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616558
tctgtatctctattatattatgacagtatagctagatctactgtctctgtatctccattatattatgacagaccagctagatctactgtctctattttattatgatagaccagctagatctactgtctctattatattatgacagaccagctcgatctgctgtctctattatattatgacagaccaactcaatctgctgtatctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctaccatctctattataattgacagaccagctagatctactgtctctgttaaattatgacagagaagctagatctactgtctctattataatatgacaatccagctagatctactgtctctattatattatgacagaccagctcgatctgctgtctctattatattatgacagaccaactcgatctgctgtatctattatattatgatagaccagctagatctaatgtctctattataatatgacagaccagctagatctaccatctctattataatttgacagaccagctagatctactgtctctattaaattatgacagagaagctagatctactgtctctattataatatgacaatccagctagatctactgtctctattataatatgacagacacactagatctactgtctatattataacatgatattccagctagatctactgtctctattataatatgacaatccagctagaactactgtctcgattataatatgacagaccaactcaatctgctgtatctattatattatgacagaccagctagatctaccgtctctattataatttgacagaccagctagatctactgtgtctattatattatgacagaccagctcgatctgctgtctctattatattatgacagaccagctagatctaccgtttctattataatactacagaccagctagatctactgtatctctattatattatgacagaccagctagatctactgtctctattgtattatgatagaccagctagatctactgtctctattatattatgacagaccaggtagatctactatctctaatat
>TU2616559
tctgtatctctattatattatgacagtatagctagatctactgtctctgtatctccattatattatgacagaccagctagatctactgtctctattttattatgatagaccagctagatctactgtctctattatattatgacagaccagctagatctactggctctattatattttgacagaccaggtagatctactggctctattatattatgacagaccagctagatctgctgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccacctagatcgactgtctctattatgatttgtcagaccagctagatctactgtctctattatattatgaaagaccagctagatctactctctctattatattatgacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616558 False 1098 lncRNA 0.34 3 1537350 1561122
TU2616559 True 405 lncRNA 0.35 2 1537350 1539451

Neighbor

gene id symbol gene type direction distance location
ncaldb LOC105006551 coding upstream 176052 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 575234 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 637413 738621 ~ 899937 (+)
rnmt rnmt coding upstream 920923 596762 ~ 616427 (+)
seh1l seh1l coding upstream 950191 565124 ~ 587159 (+)
LOC110511936 spire1 coding downstream 39228 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 150433 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 288338 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 331468 1892590 ~ 1893952 (+)
triqk triqk coding downstream 647897 2209019 ~ 2255119 (+)
G2288175 NA non-coding upstream 40960 1496107 ~ 1496390 (+)
G2288169 NA non-coding upstream 46188 1489692 ~ 1491162 (+)
G2288159 NA non-coding upstream 65181 1471965 ~ 1472169 (+)
G2288090 NA non-coding upstream 65693 1471443 ~ 1471657 (+)
G2288073 NA non-coding upstream 94662 1441921 ~ 1442688 (+)
G2288214 NA non-coding downstream 19831 1580953 ~ 1581253 (+)
G2288215 NA non-coding downstream 29214 1590336 ~ 1590632 (+)
G2288217 NA non-coding downstream 35553 1596675 ~ 1597150 (+)
G2288233 NA non-coding downstream 86508 1647630 ~ 1647834 (+)
G2288239 LOC106570780 non-coding downstream 92446 1653568 ~ 1659725 (+)
G2287973 NA other upstream 263180 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1049689 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1296710 233676 ~ 240640 (+)
G2288669 NA other downstream 760752 2321874 ~ 2324182 (+)
G2288814 NA other downstream 819325 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1499320 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2887767 4448889 ~ 4449571 (+)

Expression


Co-expression Network