G2288214


Basic Information

Item Value
gene id G2288214
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1580953 ~ 1581253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616621
cggtagtactgaggaggaggaggagtcggtagtggtcctgtcggtagtactgaggaggaggagtctgtagtggtcctgtcggtaatactgaggaggaggagtcggtagtggtcccttctgtagtactgaggagtcggtagtggtcccgtctgtagtactgaggagtcggtagtggtcccgtctgtagtactgaggagtcggtagtggtcccgtctgtagtactgaggagtcggtagtggtcccgtctgttgtactgaggagtcggtagtggtcccgtctgtagtactgaggagtcggtagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616621 True 301 lncRNA 0.56 1 1580953 1581253

Neighbor

gene id symbol gene type direction distance location
ncaldb LOC105006551 coding upstream 219655 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 618837 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 681016 738621 ~ 899937 (+)
rnmt rnmt coding upstream 964526 596762 ~ 616427 (+)
seh1l seh1l coding upstream 993794 565124 ~ 587159 (+)
LOC110511936 spire1 coding downstream 19097 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 130302 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 268207 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 311337 1892590 ~ 1893952 (+)
triqk triqk coding downstream 627766 2209019 ~ 2255119 (+)
G2288192 NA non-coding upstream 17089 1540823 ~ 1563864 (+)
G2288202 NA non-coding upstream 17759 1556098 ~ 1563194 (+)
G2288193 NA non-coding upstream 19831 1537350 ~ 1561122 (+)
G2288190 NA non-coding upstream 24010 1507861 ~ 1556943 (+)
G2288195 NA non-coding upstream 30157 1519418 ~ 1550796 (+)
G2288215 NA non-coding downstream 9083 1590336 ~ 1590632 (+)
G2288217 NA non-coding downstream 15422 1596675 ~ 1597150 (+)
G2288233 NA non-coding downstream 66377 1647630 ~ 1647834 (+)
G2288239 LOC106570780 non-coding downstream 72315 1653568 ~ 1659725 (+)
G2288245 NA non-coding downstream 93575 1674828 ~ 1675367 (+)
G2287973 NA other upstream 306783 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1093292 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1340313 233676 ~ 240640 (+)
G2288669 NA other downstream 740621 2321874 ~ 2324182 (+)
G2288814 NA other downstream 799194 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1479189 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2867636 4448889 ~ 4449571 (+)

Expression


Co-expression Network