G2288233


Basic Information

Item Value
gene id G2288233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1647630 ~ 1647834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616652
TCACTAGACaactattttcaagtcttgccacagattttccagtagatttaagtcaaaactgtaactcggccactcaagaacattcactgtcttcttggtaagcaacttcagtgtagatttggccttgtgttttaggttattgtcctgctgaaaggtcaatgtctcccagtgtctggtggaaagcagactgaaccaggttttcttc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616652 True 205 lncRNA 0.41 1 1647630 1647834

Neighbor

gene id symbol gene type direction distance location
LOC110511936 spire1 coding upstream 8057 1600350 ~ 1639573 (+)
ncaldb LOC105006551 coding upstream 286332 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 685514 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 747693 738621 ~ 899937 (+)
rnmt rnmt coding upstream 1031203 596762 ~ 616427 (+)
fam91a1 LOC106589122 coding downstream 63721 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 201626 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 244756 1892590 ~ 1893952 (+)
triqk triqk coding downstream 561185 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 877225 2525059 ~ 2686032 (+)
G2288217 NA non-coding upstream 50480 1596675 ~ 1597150 (+)
G2288215 NA non-coding upstream 56998 1590336 ~ 1590632 (+)
G2288214 NA non-coding upstream 66377 1580953 ~ 1581253 (+)
G2288192 NA non-coding upstream 83766 1540823 ~ 1563864 (+)
G2288239 LOC106570780 non-coding downstream 5734 1653568 ~ 1659725 (+)
G2288245 NA non-coding downstream 26994 1674828 ~ 1675367 (+)
G2288246 NA non-coding downstream 29079 1676913 ~ 1677148 (+)
G2288249 NA non-coding downstream 41428 1689262 ~ 1689564 (+)
G2288250 NA non-coding downstream 44556 1692390 ~ 1692639 (+)
G2287973 NA other upstream 373460 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1159969 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1406990 233676 ~ 240640 (+)
G2288669 NA other downstream 674040 2321874 ~ 2324182 (+)
G2288814 NA other downstream 732613 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1412608 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2801055 4448889 ~ 4449571 (+)

Expression


Co-expression Network