G2288239 (LOC106570780)


Basic Information

Item Value
gene id G2288239
gene name LOC106570780
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1653568 ~ 1659725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616660
AGCAATAGATAGCGTTATACTCTATGCCTCTATATGCATAGTGCTGCCTTCATTGAGATTTGAAACACATAGAAACCCACAGAGAAGCATGCCACAGGCTCATCTAGTCACATGACGTCTCCTGGTTCTCATAGTAACCACGGTCAAGGCTACAGGCTACTGTCTGTACAATAGGGTCAAGAGCAAAAGGTGGCATTAGTAAATTGGCACTGTAGTGCTAATCAGTGTCTTTGGCAATAGTTATCCTTCTTGGAAGATCTGACTTAGTAGCTGTCCGCAGCAAACAAGATATGAGGGACTGTACACAGATCGAGATGGAGGGTTGAGAAAACGCTGTTGTAGAGTAGAGCAGTCTCACTAGCAGTAAGATAGGCCTAGATATATATGGATATGCCTACACACTGATGGTTCCTTCTTGGTTTATAAAGCCATTGGCAGTGTAGCCTACTGTTGAATCACCAGCAGACCGGAACACTGCATGGTCAATGTCTAAACCTGACACAGAGCACAGGACTGGCCTCAGCATCTCTGACTGATGCTTATGGTAGGCGGGCTGCAGTGGTTATAATATACATGCCCTCTAGGTCATGGGATGGCTGAGGGACAGATATGTGGTGGACCGATCGTTCCCCAATCACCACTACTAGAAGAACAACGCAGTCCAGTGATGTTGCTGATTTGTAATGTAATATTGGTAGGGAAAAAGACAGATGAATTAGGCTCACTGCCTGAGTACTGCATGTCTGTCAAGTCTTCTGTCAAGTCTTATAATCCAcattataattcacatttcctggtGCTGCTGCAGGATTCATTTATTTTCTGTAGCAAACCGGCTCAAATGAAGCTCCTCCATCTGTAAATGTTGTGGACCATATTCTGCCAGGGGAGTAAACAGAACCCATGTGGTTCAACTCGCCTTCACTTTAATGACTCATTAGAAAGTGAACAACGACAGGTGCTTGGGAGGGAGGAATGATTGTCTATGAATTGACTATTTACATGCTGCCCACAAGTCCTTAGACTGGCAGTCGTAGTGTGGTGGATGTCGCTGTGCTTAGTTTAGAAGCAGCGTCACACCAGGTCAGGGAGTCAAGGGAGATCTTACATTCATTGTCCATTCAGGGGTATAGGAAGATATGGTTTGGTAGGATATGGTTTGGTAGGCTATGTTATGGTAGGGAACTGTATGGTAGGATATGGTATTGTATGGTAGGATATGGTAGGGTATAGTATGGTAGgctgtggtatagtatggtaggctgtggtatagtatggtagaaTATGTCATGTTAGGATATGGTATGGTAGGGTATGTTATGGTAGGGTATGTAATGGTAGGGAACTGTATGGTagggtactgtatggtatggtgtggttgGGCATAGTATGGTAGGATATGGCATAGTATGGTAGGATATGGTATTGTAGGGTATAGGAAGATATGGTTTGGTAGGCTATGTATGGTAGGGTACTGTATAGTATGGAAGGGTATGGTATTGTAGGGTATAGTATGGTAGGATATATGGTATGGTAGGGTATAGGAAGATATGGTTTGGTAGGCTATGCTATGACAGGGTATTGTTTGGTATTGTagggtatagtatggtattgtatggtaggatatggtaatgtatggtaggaTATGGTATAATAGCGTATGGTAGGATATGGTATTGTATGGTAGGATATGGTATAGTAGGGTATGGTAGGATATGGTATTGTAGGGTATAATATTGTATGGTAGGATATGGTATAGTAGGGTAGGATATGGTATAGTAGGGTATAATGATGTATGGTAGGATATGGAATAGTAGGGTAGGATATGGTATGGTAGTATATGGTATTGTAGGGTATAGTATGGTAGGATATGGTATAGTAGGGTAGGGTATGGTATTGTATGATATTGTAATGTAGGGTATGCTATTGTAGGGTATGTTAGAGTATGGTAGAATATTGTATTGTAGGGTATGGTAGGGTAGGGTATGGTATTGTAGGATATTGTAATGTAGGGTATGCTATTGTAGGGTATggtaTGGTAGGATATAGTATTGTAGGGTATAAAATGGTATGGTAGGTTATGTGTCATGGTAGGATAGTGTACGATATGGTATTCTATGGTAGGGTTGGTGTGTCATGGTAGGATAGTGTAAGATATGTTATGATATAGCAATCCAACTGCAATGGATACCTAGGCTGCTAAATTATGAACAGGGTAGATCTGGAAAGATAAACCGGAAAAATGTAGACACCGACCATACCGGTAACATTGCAGACATTTTACTGATATCCTTCATTACGATAAGTAGCCCatactagagaaatgtgatgTTGAAATTAAATAACTTTGTTAATATGGGTGAATGTTCATGGGACAATTGATGGCCACAACCATCAAACTAGCagtagtagtttaaaggataataggaaactgtggtgcacattaatgctagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattgatactagaaactgtggtgcacattgatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaattCTAGAAACTGTGATGCACATTAATGCTAGAAACTGAGGTGAACATTAATGCtagaaactgtggtgcacattaataccagaaactgtggtgcacattgttAGAAACCGAGGTGCACCTTAATACtagaaactgtggtgcacattaatgctagaaactgtggtgcacattgttagaaactgtggtgcacatcAATGCTAGAAACTGTAGTGCACATTGTTAGAAACTGAGGTGCACCTTAATACTAGAtactgtggtgcacattaattctagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattgctagctgtggtgcacattaatgttaGAAACTGTGGTGCAAATTAATAGtagaaactgtggtgcacattaatactagaaactgtggtgcacattgttagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattgttagaaactgtggtgcacattaatgctatcaactgtggtgcacattaatgttagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattgctagctgtggtgcacattaatgttaGAAACGGTGGTGCAAATTAATACtagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatactagaaactgtggtgcacattaatgctagaaactgtggtgcacattgcTAGAAGCTGTGGTGCACATTAATACtagaaactgtggtgcacattaatactagaaactgtggtgcacattaatgctatcaactgtggtgcacattaatgttagaaactgtggtgcacattaatactagaaactgtggtgcacattcatGTTAGAAACTGTGGTGCCCattcatGTTAGAAACTGTAGTGCACATTGATACtagaaactgtggtgcacattgatactagaaactgtggtgcacattgatactagaaactgtggtgcacattgatactagaaactgtggtgcacattaatactagaaactgtggtgcacattgatactagaaactgtggtgcacattgatactagaaactgtggtgcacattgatactagaaactgtggtgcacattcatTAATATAAACTGTGGTGCCCATTGTtagaaactgtggtgcacattgttagaaactgtggtgcacattaatgctagaaactgtggtgcacattcatgttagaaactgtggtgcacattgatactagaaactgtggtgcacattcattaatataaactgtggtgcacattgttagaaactgtggtgcacattaatgctagaaactgtggtgcacattgttAGAAGctgtggtgcacattaatgttagaaactgtggtgcacattaatactagaaactgtggtgcacattaatgctagaaactgtggtgcacattgttAGAAACTATGGTGCACATTGCtagaaactgtggtgcacattcatGCTAGAAACTGTGGTGCACCTTCATGTTAGAGACGGATCCTTATTCTTTATCGTTATTATatcaattcaggcaatttatGGCCATATCATCCAGCTCTGTTACAGGGCTTCAATCAGTGTTATGTGGACTTAGTTTGGGTAGGGGAGCGTtggtctgaaatggcaccctattcccttgtcTTGACCAGagcctaccctattccctatgtagtaaaCTAGTTCTGACCAGAAGTCGtgaactgtatagggaatagggtgtcatttcagattTACCCTTGGAGGAGTGTGGAGACTCTGTCCTccgatctccctccctccctccctccctccctggggcCCTTGTGACACCTCTGCCTGCCAGCTAAGATCTCAGGTTTTGATTTAGAACGCCACAGATGCTAGCATCAAGACCATGTCTGAGGCGTGTGTTGACGtcctgtgactgtgtgagagaagAGACCAACGTCTGTCTGTTCAGATGGTTTCCGATCCCAGCTGTGGTGTCCAATTATAACTGCTGTGAAGGAGTAACATgacaggtagctagctagattaGGTTAGGAGCCGGCTAGGCTAGGAGTCCATgacaggtagctagctagattaGGTTAGGAGCCGGCTAGGCTAGGAGTCCAAGGAGTTTTGGGGATGGTGTGGGTCACTCATCAGAGAGATCATATACAGTTTGTGGACCAGCTCAAATGTGACAATggactggaggagtggaggacattGCATCTGTAATgggggacagagaggcagctgtAGAAGTCAGTCCCACTGTTCACCCTACTGTTGGACTCCAGACGACCAGATGATGTTGATAAGATGTTGTGGGTCACTCAGGGGGGGTTGGGTCTGTTGGAGACACAAACCAGAGGCAGGGAGCCGTGGTCGAACAGTTTGTATGGCAGCGTCCCCTTGGAGGTCCACACGTCCGTCTTGGGGTCGTAACACTCGAAGCAGTCCGAGTCCTCGATGGTGTCGTGCCCGTTCAGGAAGCGCCCCCCCGTCACGTACAGCTTGTTGTTGATGACCGTGGCGCTGTGGTGCATTCGCCTCTCCTTCAGGTTCTCACACTTTACAAACTTGTTGGCTTTGGTGTCGTAGGCGATCATCCGTCTAGTGTACCCTACTCCAATGATGTAGATCTTATCTTCGATGACAGCAGCAGGTGCACAGACGTTCTTCACTGTCCTGGTTTCCAATCTGGACCACAGGTTCCTGGAGATGTGATacacctgagagacagagatatcagagagagttccagtcagccagtcagtca

Function

NR:

description
kelch-like protein 38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616660 True 5615 lncRNA 0.42 5 1653568 1659725

Neighbor

gene id symbol gene type direction distance location
LOC110511936 spire1 coding upstream 13995 1600350 ~ 1639573 (+)
ncaldb LOC105006551 coding upstream 292270 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 691452 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 753631 738621 ~ 899937 (+)
rnmt rnmt coding upstream 1037141 596762 ~ 616427 (+)
fam91a1 LOC106589122 coding downstream 51830 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 189735 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 232865 1892590 ~ 1893952 (+)
triqk triqk coding downstream 549294 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 865334 2525059 ~ 2686032 (+)
G2288233 NA non-coding upstream 5734 1647630 ~ 1647834 (+)
G2288217 NA non-coding upstream 56418 1596675 ~ 1597150 (+)
G2288215 NA non-coding upstream 62936 1590336 ~ 1590632 (+)
G2288214 NA non-coding upstream 72315 1580953 ~ 1581253 (+)
G2288202 NA non-coding upstream 90374 1556098 ~ 1563194 (+)
G2288245 NA non-coding downstream 15103 1674828 ~ 1675367 (+)
G2288246 NA non-coding downstream 17188 1676913 ~ 1677148 (+)
G2288249 NA non-coding downstream 29537 1689262 ~ 1689564 (+)
G2288250 NA non-coding downstream 32665 1692390 ~ 1692639 (+)
G2288268 NA non-coding downstream 38670 1698395 ~ 1698604 (+)
G2287973 NA other upstream 379398 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1165907 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1412928 233676 ~ 240640 (+)
G2288669 NA other downstream 662149 2321874 ~ 2324182 (+)
G2288814 NA other downstream 720722 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1400717 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2789164 4448889 ~ 4449571 (+)

Expression


Co-expression Network