G2288344


Basic Information

Item Value
gene id G2288344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1863292 ~ 1867092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2616804
gacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtaccttgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtaccttgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgGTAGACTAGGTG
>TU2616805
gacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtaccttgatagactaggtgtgttgacagtactctgaAAGACTAGGTGTGTTTACTCAGCggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtaccttgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgatagtactctgatagactaggtgtgttTACTCAGCggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttgacagtactctgatagactaggtgtgttTACTCAGCggtgtgttgacagtact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2616804 False 220 lncRNA 0.44 2 1863292 1863583
TU2616805 True 533 lncRNA 0.43 3 1863292 1867092

Neighbor

gene id symbol gene type direction distance location
lratd2a LOC106589121 coding upstream 12042 1849460 ~ 1851250 (+)
fam91a1 LOC106589122 coding upstream 38174 1711555 ~ 1825118 (+)
LOC110511936 spire1 coding upstream 223719 1600350 ~ 1639573 (+)
ncaldb LOC105006551 coding upstream 501994 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 901176 936322 ~ 962116 (+)
LOC118946536 NA coding downstream 25498 1892590 ~ 1893952 (+)
triqk triqk coding downstream 341927 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 657967 2525059 ~ 2686032 (+)
pip4p2 LOC106570754 coding downstream 899593 2766685 ~ 2800192 (+)
LOC110487823 LOC106570755 coding downstream 949384 2816476 ~ 2845566 (+)
G2288334 NA non-coding upstream 14778 1843342 ~ 1848514 (+)
G2288336 NA non-coding upstream 15035 1846812 ~ 1848257 (+)
G2288335 NA non-coding upstream 18226 1843719 ~ 1845066 (+)
G2288283 NA non-coding upstream 33848 1788267 ~ 1829444 (+)
G2288293 NA non-coding upstream 79787 1782743 ~ 1783505 (+)
G2288446 NA non-coding downstream 30988 1898080 ~ 1898672 (+)
G2288452 NA non-coding downstream 38679 1905771 ~ 1906229 (+)
G2288489 NA non-coding downstream 78259 1945351 ~ 1954328 (+)
G2288551 NA non-coding downstream 223420 2090512 ~ 2090874 (+)
G2288558 NA non-coding downstream 231718 2098810 ~ 2099142 (+)
G2287973 NA other upstream 589122 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1375631 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1622652 233676 ~ 240640 (+)
G2288669 NA other downstream 454782 2321874 ~ 2324182 (+)
G2288814 NA other downstream 513355 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1193350 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2581797 4448889 ~ 4449571 (+)

Expression


Co-expression Network