XLOC_004174



Basic Information


Item Value
gene id XLOC_004174
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27800859 ~ 27809715 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008474
cattcacgtctgcgcggtttatgagaagAAAAGCCTGTGAATATACTTCCAGACActtttagctgctagatgtcagtcagataacatttctctttgcattgaactttcagTGTATTCCATTCAGAggtgctgtttatgttcacacagctacattacacatcaactctgagttaaaaacaaaaaaaactttaaaaaaatatttctattatttaccAGTGCATGGGTCTGGCAGTGTGAAAATGTGTAAGACATTGAAAtactttggtgtttttttttttatgtcaatgaTAAAAAGAAGGATGTGTAGCTTTCCACAATTAGTATATTAGTTGCATCTTATTATTTGTGCTGCTTAAATTGTTCTGAACAAACCTG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008474 True 375 lncRNA 0.33 2 27800859 27809715

Neighbor


gene id symbol gene type direction distance location
XLOC_004172 cass4 coding downstream 22028 27745618 ~ 27778831 (-)
XLOC_004171 fam120a coding downstream 61810 27705030 ~ 27739049 (-)
XLOC_004170 phf2 coding downstream 98024 27644524 ~ 27702835 (-)
XLOC_004169 NA coding downstream 175394 27543578 ~ 27625465 (-)
XLOC_004168 ptpdc1a coding downstream 263198 27511277 ~ 27537661 (-)
XLOC_004175 cstf1 coding upstream 7586 27817301 ~ 27827533 (-)
XLOC_004176 eif4g3a coding upstream 18497 27828212 ~ 27917730 (-)
XLOC_004177 ece1 coding upstream 109987 27919702 ~ 28050559 (-)
XLOC_004178 si:ch211-220m17.4 coding upstream 242984 28052699 ~ 28086924 (-)
XLOC_004179 lactbl1b coding upstream 317484 28127199 ~ 28390101 (-)
XLOC_004063 CR854846.1 misc downstream 11673181 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15109168 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15179092 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15209563 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15287597 12512966 ~ 12513262 (-)
XLOC_004167 NA non-coding downstream 292886 27502205 ~ 27507973 (-)
XLOC_004165 CR847934.1 non-coding downstream 1052430 26748292 ~ 26748429 (-)
XLOC_004152 CR933820.1 non-coding downstream 2130904 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2323879 25475305 ~ 25476980 (-)
XLOC_004180 NA non-coding upstream 387242 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 609161 28418876 ~ 28424141 (-)
XLOC_004182 NA non-coding upstream 704027 28513742 ~ 28522344 (-)
XLOC_004183 BX649345.1 non-coding upstream 712649 28522364 ~ 28525496 (-)
XLOC_004187 NA non-coding upstream 1275651 29085366 ~ 29088626 (-)

Expression



Co-expression Network