G2288629


Basic Information

Item Value
gene id G2288629
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2186095 ~ 2186310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2617190
cttgaGGTGAGTCCTGTTTCCAGGACTCCAGCCTGAATGCTAagagtcatgtctggaggaaacctggcaccatccctacggtgaagcatggtggtggcaccatcatgctgtgggaatgtttttcagcggcagagagagagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagac

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2617190 True 216 lncRNA 0.52 1 2186095 2186310

Neighbor

gene id symbol gene type direction distance location
LOC118946536 NA coding upstream 292143 1892590 ~ 1893952 (+)
lratd2a LOC106589121 coding upstream 334845 1849460 ~ 1851250 (+)
fam91a1 LOC106589122 coding upstream 360977 1711555 ~ 1825118 (+)
LOC110511936 spire1 coding upstream 546522 1600350 ~ 1639573 (+)
ncaldb LOC105006551 coding upstream 824797 1280933 ~ 1361298 (+)
triqk triqk coding downstream 22709 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 338749 2525059 ~ 2686032 (+)
pip4p2 LOC106570754 coding downstream 580375 2766685 ~ 2800192 (+)
LOC110487823 LOC106570755 coding downstream 630166 2816476 ~ 2845566 (+)
LOC110487826 znf519 coding downstream 697618 2883928 ~ 2886784 (+)
G2288617 NA non-coding upstream 18688 2167140 ~ 2167407 (+)
G2288615 NA non-coding upstream 19918 2165969 ~ 2166177 (+)
G2288601 NA non-coding upstream 44724 2141160 ~ 2141371 (+)
G2288590 NA non-coding upstream 61439 2124452 ~ 2124656 (+)
G2288586 NA non-coding upstream 65344 2120547 ~ 2120751 (+)
G2288632 NA non-coding downstream 2600 2188910 ~ 2189132 (+)
G2288613 NA non-coding downstream 23766 2210076 ~ 2256030 (+)
G2288655 NA non-coding downstream 66632 2252942 ~ 2253405 (+)
G2288660 NA non-coding downstream 76799 2263109 ~ 2268821 (+)
G2288671 NA non-coding downstream 99484 2285794 ~ 2286419 (+)
G2287973 NA other upstream 911925 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1698434 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1945455 233676 ~ 240640 (+)
G2288669 NA other downstream 135564 2321874 ~ 2324182 (+)
G2288814 NA other downstream 194137 2380447 ~ 2381395 (+)
G2289325 NA other downstream 874132 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2262579 4448889 ~ 4449571 (+)

Expression


Co-expression Network