G2289008


Basic Information

Item Value
gene id G2289008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2785817 ~ 2787193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2617663
agtgtcaacatgactgagaagacacatgacctggtagtagaccagtgtcaacatgactgagaagacacgtgacctggtagtagaccagtgtcaacatgactgagaagacacgtgacctggtagtagaccagtgtcaacatgactgagaagacacgtgacctggtagtagaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagagtcaacatgactgag
>TU2617665
agaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagtgtcaacatgactgagaagacacgtgacctggtagtagaccagtgtcaacatgactgagaagacacgtgacctggtagtagaccagagtcaacatgactgagaagacacgtgacctggtagtagaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagtgtcaacatgactgagaagacacatgacctggtagtagaccagagtcaacatgactgagaagacacatgacctggtatgaaagac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2617663 False 319 lncRNA 0.47 2 2785817 2786737
TU2617665 True 307 lncRNA 0.47 4 2786457 2787193

Neighbor

gene id symbol gene type direction distance location
cbfa2t2 runx1t1 coding upstream 99785 2525059 ~ 2686032 (+)
triqk triqk coding upstream 530698 2209019 ~ 2255119 (+)
LOC118946536 NA coding upstream 891865 1892590 ~ 1893952 (+)
lratd2a LOC106589121 coding upstream 934567 1849460 ~ 1851250 (+)
fam91a1 LOC106589122 coding upstream 960699 1711555 ~ 1825118 (+)
LOC110487823 LOC106570755 coding downstream 29283 2816476 ~ 2845566 (+)
LOC110487826 znf519 coding downstream 96735 2883928 ~ 2886784 (+)
angpt2b LOC106570762 coding downstream 142951 2930144 ~ 2992088 (+)
LOC118946537 NA coding downstream 373025 3160218 ~ 3181800 (+)
pef1 pef1 coding downstream 2215785 5002978 ~ 5011804 (+)
G2289004 NA non-coding upstream 9678 2774484 ~ 2776139 (+)
G2288979 NA non-coding upstream 108318 2676704 ~ 2677499 (+)
G2288933 NA non-coding upstream 204437 2579616 ~ 2581380 (+)
G2288926 NA non-coding upstream 217126 2567167 ~ 2568691 (+)
G2288915 NA non-coding upstream 241086 2544201 ~ 2544731 (+)
G2289010 NA non-coding downstream 1609 2788802 ~ 2789228 (+)
G2289029 NA non-coding downstream 34697 2821890 ~ 2822153 (+)
G2289040 NA non-coding downstream 47586 2834779 ~ 2835420 (+)
G2289026 NA non-coding downstream 51924 2839117 ~ 2839718 (+)
G2289032 NA non-coding downstream 90600 2877793 ~ 2879143 (+)
G2288814 NA other upstream 404422 2380447 ~ 2381395 (+)
G2288669 NA other upstream 461635 2321874 ~ 2324182 (+)
G2287973 NA other upstream 1511647 1273374 ~ 1274170 (+)
G2287470 NA other upstream 2298156 486793 ~ 487661 (+)
G2289325 NA other downstream 273249 3060442 ~ 3060779 (+)
G2290395 NA other downstream 1661696 4448889 ~ 4449571 (+)
G2290455 NA other downstream 1759711 4546904 ~ 4548844 (+)
smim12 smim12 other downstream 2227463 5014549 ~ 5018314 (+)
dlgap3 dlgap3 other downstream 2597458 5113201 ~ 5412625 (+)

Expression


Co-expression Network