XLOC_004175 (cstf1)


Basic Information

Item Value
gene id XLOC_004175
gene name cstf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27817301 ~ 27827533 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007977
ACGTCTTGACGTAAGACGCACAGAACGTGTGCGCACATCCCTTGAAGTGTGCAGGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGATCACGTGGACGAGGTCACCTGTCTCTCTTTTCACCCGACAGAGCAGATCTTGGCCTCTGGATCTCGAGATTACACTCTCAAACTCTTCGATTATTCAAAACCTTCTGCAAAAAGAGCCTTCAAGCACGTACAGGAAGCAGAAATGCTGCGGTCCATATCCTTCCACCCCTCTGGGGATTTCTTACTGGTTGGTACGCAGCATCCAACACTTCGCCTATATGATGTTAACACTTTCCAGTGTTTCGTGTCCTGCAACCCCCTGGATCAGCACACAGACACCATTTGCGGAGTCTGTTACAATCCCAGCGCTAACAGCTACGTGACCTGCAGCAAAGATGGCAGCATCAAACTCTGGGACGGCGTGTCCAACCGCTGCGTGACCACCTTTGATAAAGCTCATGAGGGTGCAGAGGTCTGTTCGGCCGTCTTCTCCAAGAACTCAAAGTACATTTTGTCCACCGGGAAAGATTCTGTTGCCAAACTCTGGGAAATTTCCACAGGCCGGACGTTGGTCAAGTACACAGGTGCCGGTCTCAGTGGGCGGCAAACACACCGCACTCAGGGTGTTTTCAACCACACCGAGGACTATGTGCTACTGCCGGACGAGCGGACCATCAGCCTGTGCTGCTGGGATTCACGCACAGCCGAGAGGAAAAACCTGCTGTCACTGGGCCACAACAACATCGTGCGCTGCATCGTACACTCACCCACAAACCCCGGCTTCATGACCTGCAGCGACGACTTCAGAGCACGATTCTGGTATCGCCGCACCACCACTGACTAACAGACATTTGTGTGCTTTGAGACCCCAAGAATCTGAAGTTTACTTTTAACAGCAGGTCCCAAACGCAGAAATGTCCACACTGTGTATGACAACACCAAAGCTGCGTAATGTTCAGCACACacagtctttttaaaagcatgaaagaGCTCGATGTCTCTTCTCACTGCGGTACCTGTGCATTACTGTCAGctagtgctgtttttttttacaaaatgtaactttttttagaACTTTGTTTCATGGATTTGAGATCATTTAGTAGTATCAGAATCGTCATCCATTAAGATGCgttgatttattcatttgcaGCTAGTGgaaaaacacattttgtgttaTTTGTGTATCCGATAATAAGTAGACCGGGATCATTCTATCATGGCGCGTGCCTAGAATGTCTTTTTGATTTCAATTTGTGTACCGTgctctttgtttttattaaaaaaactctgataaattgtttgtttgtttgttttacagttgTGACAGTCCTGTTTATGAATGGCACTAACCATTTTGTTTGTAGAGGAGATTGCGATTGCTCAATTTGGCTTAAAATCCCTGTGAAATCAAATTaggggctgcacgatattggaaaattgCAATATGAATGATTGCGATCATGAACATCATTTCACAACATGACTATTTAAAAGAATTTATCGTTTTACATGGATTGGGATCATTTTTTTACTGCAGTCCATCAGCATTAAATctacaaaattatacaaaaaaatgtgtatttatacatatacaaaataaattcaactaaagcacagatgaaaacaacagaacaaagagAAAAATGAACAAACAGCACTTTATGGTTATAGCTGAAGTCAGAAATTCAATAATCTAATGTAAATTAACACTAGATAGCAGTGGTAGGACACCTCATCGccagccacatgtggctctttgaccaaaaatacgCGGCTATTCCTTCAGTAATATTTTAaggtttaaaaattatatttgtcaCAAGAAATCCATTTactattgaaaatacaatttcattttattgcatttttttacagcaaaatgaataagaactcCGTTTACAATAAAAGGCCATTTTAACCAGTGCATGTGGACCCCAGTGTAGCTCAACTTAAATTGCTACACAAGTTAAGGGCAAACAACCTCTGTTTCTATAGGAACCTCACACacataaatgtaaacaatattcaTGAGTGGtgatggcaaaaaaataaaaaaaatctttattcatTCAA
>TCONS_00007978
CTTTGTATCGTATTTATTGCTCACTTCAAACCTTAATTCTTACTTAACGCAAAAGCAGACACTGGATACATTTTATACGTCGCATGTAATACAAGCTGTTTTATAGCTATAAAGATTTAACGTACACAACAATGGCTGTGTTTTGAATCCATGTAACGTTACCTTAAGTTTCAtacttaaacagctttttaaaaccGCCACCAAGCGTGTTGTCTTGTTAGGCAGCTCGAAAACACAAAACTATCTGCTAACAAGGCGTTTTATCTTCCTCCTCTAAAGTGCAGGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGATCACGTGGACGAGGTCACCTGTCTCTCTTTTCACCCGACAGAGCAGATCTTGGCCTCTGGATCTCGAGATTACACTCTCAAACTCTTCGATTATTCAAAACCTTCTGCAAAAAGAGCCTTCAAGCACGTACAGGAAGCAGAAATGCTGCGGTCCATATCCTTCCACCCCTCTGGGGATTTCTTACTGGTTGGTACGCAGCATCCAACACTTCGCCTATATGATGTTAACACTTTCCAGTGTTTCGTGTCCTGCAACCCCCTGGATCAGCACACAGACACCATTTGCGGAGTCTGTTACAATCCCAGCGCTAACAGCTACGTGACCTGCAGCAAAGATGGCAGCATCAAACTCTGGGACGGCGTGTCCAACCGCTGCGTGACCACCTTTGATAAAGCTCATGAGGGTGCAGAGGTCTGTTCGGCCGTCTTCTCCAAGAACTCAAAGTACATTTTGTCCACCGGGAAAGATTCTGTTGCCAAACTCTGGGAAATTTCCACAGGCCGGACGTTGGTCAAGTACACAGGTGCCGGTCTCAGTGGGCGGCAAACACACCGCACTCAGGGTGTTTTCAACCACACCGAGGACTATGTGCTACTGCCGGACGAGCGGACCATCAGCCTGTGCTGCTGGGATTCACGCACAGCCGAGAGGAAAAACCTGCTGTCACTGGGCCACAACAACATCGTGCGCTGCATCGTACACTCACCCACAAACCCCGGCTTCATGACCTGCAGCGACGACTTCAGAGCACGATTCTGGTATCGCCGCACCACCACTGACTAACAGACATTTGTGTGCTTTGAGACCCCAAGAATCTGAAGTTTACTTTTAACAGCAGGTCCCAAACGCAGAAATGTCCACACTGTGTATGACAACACCAAAGCTGCGTAATGTTCAGCACACacagtctttttaaaagcatgaaagaGCTCGATGTCTCTTCTCACTGCGGTACCTGTGCATTACTGTCAGctagtgctgtttttttttacaaaatgtaactttttttagaACTTTGTTTCATGGATTTGAGATCATTTAGTAGTATCAGAATCGTCATCCATTAAGATGCgttgatttattcatttgcaGCTAGTGgaaaaacacattttgtgttaTTTGTGTATCCGATAATAAGTAGACCGGGATCATTCTATCATGGCGCGTGCCTAGAATGTCTTTTTGATTTCAATTTGTGTACCGTgctctttgtttttattaaaaaaactctgataaattg
>TCONS_00007979
TTGACGTAAGACGCACAGAACGTGTGCGCACATCCCTTGAAGTGTGCAGGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGATCACGTGGACGAGGTCACCTGTCTCTCTTTTCACCCGACAGAGCAGATCTTGGCCTCTGGATCTCGAGATTACACTCTCAAACTCTTCGATTATTCAAAACCTTCTGCAAAAAGAGCCTTCAAGCACGTACAGGAAGCAGAAATGCTGCGGTCCATATCCTTCCACCCCTCTGGGGATTTCTTACTGGTTGGTACGCAGCATCCAACACTTCGCCTATATGATGTTAACACTTTCCAGTGTTTCGTGTCCTGCAACCCCCTGGATCAGCACACA
>TCONS_00007980
TTTTGTGCAACTTTAAATGAATGATACTCACTTTGTATCGTATTTATTGCTCACTTCAAACCTTAATTCTTACTTAACGCAAAAGCAGACACTGGATACATTTTATACGTCGCATGTAATACAAGCTGTTTTATAGCTATAAAGATTTAACGTACACAACAATGGCTGTGTTTTGAATCCATTGCAGGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGATCACGTGGACGAGGTCACCTGTCTCTCTTTTCACCCGACAGAGCAGATCTTGGCCTCTGGATCTCGAGATTACACTCTCAAACTCTTCGATTATTCAAAACCTTCTGCAAAAAGAGCCTTCAAGCACGTACAGGAAGCAGAAATGCTGCGGTCCATATCCTTCCACCCCTCTGGGGATTTCTTACTGGTTGGTACGCAGCATCCAACACTTCGCCTATATGATGTTAACACTTTCCAGTGTTTCGTGTC
>TCONS_00007981
TGCAACTTTAAATGAATGATACTCACTTTGTATCGTATTTATTGCTCACTTCAAACCTTAATTCTTACTTAACGCAAAAGCAGACACTGGATACATTTTATACGTCGCATGTAATACAAGCTGTTTTATAGCTATAAAGATTTAACGTACACAACAATGGCTGTGTTTTGAATCCATGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGA

Function

symbol description
cstf1 Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1).

GO:

id name namespace
GO:0005848 mRNA cleavage stimulating factor complex cellular_component

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-2958 Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1).

Ensembl:

ensembl_id ENSDARG00000044820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007977 False 2598 mRNA 0.44 6 27817301 27827533
TCONS_00007978 False 2053 mRNA 0.47 5 27818076 27827442
TCONS_00007979 False 851 mRNA 0.51 5 27820599 27827528
TCONS_00007980 False 964 mRNA 0.47 5 27820624 27827472
TCONS_00007981 True 705 mRNA 0.47 4 27821029 27827467

Neighbor

gene id symbol gene type direction distance location
XLOC_004174 NA coding downstream 7586 27800859 ~ 27809715 (-)
XLOC_004173 BX601648.1 coding downstream 10534 27783758 ~ 27806767 (-)
XLOC_004172 cass4 coding downstream 38470 27745618 ~ 27778831 (-)
XLOC_004171 fam120a coding downstream 78252 27705030 ~ 27739049 (-)
XLOC_004170 phf2 coding downstream 114466 27644524 ~ 27702835 (-)
XLOC_004176 eif4g3a coding upstream 679 27828212 ~ 27917730 (-)
XLOC_004177 ece1 coding upstream 92169 27919702 ~ 28050559 (-)
XLOC_004178 si:ch211-220m17.4 coding upstream 225166 28052699 ~ 28086924 (-)
XLOC_004179 lactbl1b coding upstream 299666 28127199 ~ 28390101 (-)
XLOC_004180 NA coding upstream 369424 28196957 ~ 28200504 (-)
XLOC_004063 CR854846.1 misc downstream 11689623 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15125610 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15195534 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15226005 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15304039 12512966 ~ 12513262 (-)
XLOC_004169 NA non-coding downstream 191836 27543578 ~ 27625465 (-)
XLOC_004167 NA non-coding downstream 309328 27502205 ~ 27507973 (-)
XLOC_004165 CR847934.1 non-coding downstream 1068872 26748292 ~ 26748429 (-)
XLOC_004181 NA non-coding upstream 591343 28418876 ~ 28424141 (-)
XLOC_004182 NA non-coding upstream 686209 28513742 ~ 28522344 (-)
XLOC_004183 BX649345.1 non-coding upstream 694831 28522364 ~ 28525496 (-)
XLOC_004187 NA non-coding upstream 1257833 29085366 ~ 29088626 (-)

Expression


Co-expression Network