G2289546


Basic Information

Item Value
gene id G2289546
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3442871 ~ 3443465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2618314
TCGAGAAGATCACGTAGACATGATATGGAGGGCTGGAAGTAACATTCATGAACGAAGGGATAATGAGTCATTCATTGAATCTGAGTCTCCATCTCGCGTCATGGGGATGTCCAAAAATATACAGGGTTGATCAGGTCTGCAGTATTATCGCACATTCATGAATAAAGGGATAAAGGTCGAGCTTCTAAATCTCACATCATAATGGCTCAATCCCGTGACTGATGGCTGGATGACATGAAGACTTCATAGGAGTTGGACGTGGGTGTGTCGGTGGGATGAAAGGCAAGTAAAACGTCCAACTCAACGTCCATGTTCTCCATCCTTCTAAACGTCCACAGTGGCAAATTCTACAGGATCAAGGAGAGGACACACAGTGCAAGGGAAGCTTTTCATAAAGCTGAGCCTTGTTTCTCCAGAGCCTTCGTAGCGTTAATATCATAGTTAGAAACTTCGTACAAAAATTTATCTTTAGCAGCCAAAGTTTCCCAAAGACTTTGTTAGTACCAACCTTTGTGCATCCACGAGGGATCCAAACCCCTCGTTAAAGGGTCGTTAGAGGGTCACTTTATTCacagggtggcagggtagcctagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2618314 True 595 lncRNA 0.45 1 3442871 3443465

Neighbor

gene id symbol gene type direction distance location
LOC118946537 NA coding upstream 261071 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 450783 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 556087 2883928 ~ 2886784 (+)
LOC110487823 LOC106570755 coding upstream 597305 2816476 ~ 2845566 (+)
pip4p2 LOC106570754 coding upstream 642679 2766685 ~ 2800192 (+)
pef1 pef1 coding downstream 1559513 5002978 ~ 5011804 (+)
smim12 smim12 coding downstream 1571084 5014549 ~ 5018314 (+)
dlgap3 dlgap3 coding downstream 1852344 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 2065536 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 2148647 5592112 ~ 5615373 (+)
G2289539 NA non-coding upstream 23937 3417919 ~ 3418934 (+)
G2289538 NA non-coding upstream 25254 3417417 ~ 3417617 (+)
G2289537 NA non-coding upstream 25574 3417005 ~ 3417297 (+)
G2289509 NA non-coding upstream 62333 3380315 ~ 3380538 (+)
G2289464 NA non-coding upstream 92643 3349944 ~ 3350228 (+)
G2289548 NA non-coding downstream 3615 3447080 ~ 3448322 (+)
G2289564 NA non-coding downstream 40394 3483859 ~ 3484871 (+)
G2289575 NA non-coding downstream 60089 3503554 ~ 3515983 (+)
G2289607 NA non-coding downstream 138091 3581556 ~ 3581902 (+)
G2289635 NA non-coding downstream 192233 3635698 ~ 3636126 (+)
G2289325 NA other upstream 382092 3060442 ~ 3060779 (+)
G2288814 NA other upstream 1061476 2380447 ~ 2381395 (+)
G2288669 NA other upstream 1118689 2321874 ~ 2324182 (+)
triqk triqk other upstream 1187798 2209019 ~ 2255119 (+)
G2287973 NA other upstream 2168701 1273374 ~ 1274170 (+)
G2290395 NA other downstream 1005424 4448889 ~ 4449571 (+)
G2290455 NA other downstream 1103439 4546904 ~ 4548844 (+)
G2291194 NA other downstream 1973367 5416832 ~ 5418238 (+)

Expression


Co-expression Network