G2290994


Basic Information

Item Value
gene id G2290994
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5170412 ~ 5171309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2620014
gggaggtattaggagagagagagaggggggtagtagaagagagagagaggtagtaggagttccaaattgagcagctgctgaaaaatgagctcctgtatatattgagatttaaatggttttttagagtgaagtacatcgaaaaaatcaaaagaaaactgcaagactcaatagaagacaatacaagcaacaaaccaaaaagacaggatttcgaaaaagtaactatttttcataaaattatacagttatcttagctagctgaattgttagctgaattgtttacatgttgctaagcagttgctagggactctcctggaagaagctagctagcttacaaagaataacaaaaaaaatatctagttaacagaagaaaggaagacaaaataaggacaaaataaggacagaagaaaaaagaaaataaaaaaaggacaacaaagtgaaacagtcctctgaagaaacaagagagcataatacaagaaacagcacttctattgcaacattgtagccaacatcaccagcgttgctatggaaattgtttacccaccagacatccaaacagagaaagctaagaaaagtttcaaaggtttgttgatgggacagaaccatgaatgcctgtttgcagatcttaccagttacaaaacaagagcaaatttaatttttaataccaatcgag
>TU2620013
gagagagaggtagtaggagagagagggaggtagtatgagagagagagggaggtagtaggagagaggtggaggtagtaggagagggagttccaaattgagcagctgctgaaaaatgagctcctgtatatattgagatttaaatggttttttagagtgaagtacatcgaaaaaatcaaaagaaaactgcaagactcaatagaagacaatacaagcaacaaaccaaaaagacaggatttcgaaaaagtaactatttttcataaaattatacagttatcttagctagctgaattgttagctgaattgtttacatgttgctaagcagttgctagggactctcctggaagaagctagctagcttacaaagaataacaaaaaaaatatctagttaacagaagaaaggaagacaaaataaggacaaaataaggacagaagaaaaaagaaaataaaaaaaggacaacaaagtgaaacagtcctctgaagaaacaagagagcataatacaagaaacagcacttctattgcaacattgtagccaacatcaccagcgttgctatggaaattgtttacccaccagacatccaaacagagaaagctaagaaaagtttcaaaggtttgttgatgggacagaaccatgaatgcctgtttgcagatcttaccagttacaaaacaagagcaaatttaatttttaataccaatcgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2620014 False 670 lncRNA 0.35 2 5170412 5171309
TU2620013 True 698 lncRNA 0.36 2 5170528 5171309

Neighbor

gene id symbol gene type direction distance location
smim12 smim12 coding upstream 152464 5014549 ~ 5018314 (+)
pef1 pef1 coding upstream 158608 5002978 ~ 5011804 (+)
LOC118946537 NA coding upstream 1988612 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 2178324 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 2283628 2883928 ~ 2886784 (+)
dlgap3 dlgap3 coding downstream 124500 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 337692 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 420803 5592112 ~ 5615373 (+)
slc6a18 LOC106570711 coding downstream 460988 5632297 ~ 5641547 (+)
LOC110489437 LOC106570711 coding downstream 473874 5645183 ~ 5677904 (+)
G2290970 NA non-coding upstream 47322 5122626 ~ 5123090 (+)
G2290967 NA non-coding upstream 49476 5120546 ~ 5120936 (+)
G2290955 NA non-coding upstream 60554 5109571 ~ 5109858 (+)
G2290938 NA non-coding upstream 75230 5094972 ~ 5095182 (+)
G2290933 NA non-coding upstream 85320 5084836 ~ 5085092 (+)
G2291000 NA non-coding downstream 9849 5181158 ~ 5284057 (+)
G2291016 NA non-coding downstream 28167 5199476 ~ 5200039 (+)
G2291025 NA non-coding downstream 42094 5213403 ~ 5215647 (+)
G2291049 NA non-coding downstream 114255 5285564 ~ 5286330 (+)
G2291078 NA non-coding downstream 180001 5351310 ~ 5354393 (+)
G2290455 NA other upstream 621568 4546904 ~ 4548844 (+)
G2290395 NA other upstream 720841 4448889 ~ 4449571 (+)
G2289325 NA other upstream 2109633 3060442 ~ 3060779 (+)
G2288814 NA other upstream 2789017 2380447 ~ 2381395 (+)
G2291194 NA other downstream 245523 5416832 ~ 5418238 (+)
G2291219 NA other downstream 300254 5471563 ~ 5472153 (+)
wipf3 NA other downstream 553015 5724270 ~ 5749736 (+)
G2291490 NA other downstream 976515 6147824 ~ 6148246 (+)

Expression


Co-expression Network