G2291000


Basic Information

Item Value
gene id G2291000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5181158 ~ 5284057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2620020
AGGAagactgggacattttcagcttccaggaatcgtgtacagatccttgcgacatggggacATCCATTAtcttgctgaaacatgagttgaCTGCGGATTGATGGTATGACcttgggcctcaggatctcatcactgtgtgtctgtgcattcaaattgccattgataaaatgcaattgtgttcgttatccgtagcttatgcctgcccatatcataaccc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2620020 True 217 lncRNA 0.45 2 5181158 5284057

Neighbor

gene id symbol gene type direction distance location
smim12 smim12 coding upstream 163210 5014549 ~ 5018314 (+)
pef1 pef1 coding upstream 169354 5002978 ~ 5011804 (+)
LOC118946537 NA coding upstream 1999358 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 2189070 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 2294374 2883928 ~ 2886784 (+)
dlgap3 dlgap3 coding downstream 11752 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 224944 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 308055 5592112 ~ 5615373 (+)
slc6a18 LOC106570711 coding downstream 348240 5632297 ~ 5641547 (+)
LOC110489437 LOC106570711 coding downstream 361126 5645183 ~ 5677904 (+)
G2290994 NA non-coding upstream 9849 5170412 ~ 5171309 (+)
G2290970 NA non-coding upstream 58068 5122626 ~ 5123090 (+)
G2290967 NA non-coding upstream 60222 5120546 ~ 5120936 (+)
G2290955 NA non-coding upstream 71300 5109571 ~ 5109858 (+)
G2290938 NA non-coding upstream 85976 5094972 ~ 5095182 (+)
G2291049 NA non-coding downstream 1507 5285564 ~ 5286330 (+)
G2291078 NA non-coding downstream 67253 5351310 ~ 5354393 (+)
G2291082 NA non-coding downstream 79263 5363320 ~ 5365258 (+)
G2291186 NA non-coding downstream 96020 5380077 ~ 5380283 (+)
G2291198 NA non-coding downstream 101308 5385365 ~ 5386056 (+)
G2290455 NA other upstream 632314 4546904 ~ 4548844 (+)
G2290395 NA other upstream 731587 4448889 ~ 4449571 (+)
G2289325 NA other upstream 2120379 3060442 ~ 3060779 (+)
G2288814 NA other upstream 2799763 2380447 ~ 2381395 (+)
G2291194 NA other downstream 132775 5416832 ~ 5418238 (+)
G2291219 NA other downstream 187506 5471563 ~ 5472153 (+)
wipf3 NA other downstream 440267 5724270 ~ 5749736 (+)
G2291490 NA other downstream 863767 6147824 ~ 6148246 (+)

Expression


Co-expression Network