G2291312


Basic Information

Item Value
gene id G2291312
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5698936 ~ 5699674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2620406
CCCCCATggtaaaatgtatagaattgcaagaaattagCTTCCGAGACTCAAAATATATCTGTGTGTATATGGCCAGTGTGTGAATAGAAAAAGTGTGTATTtgcagtagttatacaggatgagcCACGACGAGTCCAATCAGAGAGCCTCATTCATGGTGGCTCTCTGGTACAATGTGAATTGTATAGGACCAATATGAAAAACGTCTCATCTGCTACTGTACACACGTTTTATGTTCTGATAAAATCACAAGACGGTTTTAATTTAATGAACGACAGAACAAAGTATTGTTTATAGAATATACACCTGGGGGGGAGAGACACACGAGGTGAAAGCAAACAAAAACAGACCATCGTTTGGTTCAAAGCAAAAATACCACCAACCATAATTAAAACACACTTATTTAAATGTTAAAATAGCAAGGTAGTAGCCTATTTTAGTCCCTGGTACAGTCAGACCACCAGTAGTCTGACTATCATCTGTTTTACATTCTGCTCCACCCTTTCATTTTAAAAGGAAACCTTTCAACCAAATGACATGGCACTGTTACCAGGAACACCATCTTGGTTGAAACTTGACATCATTCAGAATCCATTTGATAGATTGTTttttcttctccc
>TU2620405
ACGGTTTTAATTTAATGAACGACAGAACAAAGTATTGTTTATAGAATATACACCTGGGGGGGAGAGACACACGAGGTGAAAGCAAACAAAAACAGACCATCGTTTGGTTCAAAGCAAAAATACCACCAACCATAATTAAAACACACTTATTTAAATGTTAAAATAGCAAGGTAGTAGCCTATTTTAGTCCCTGGTACAGTCAGACCACCAGTAGTCTGACTATCATCTGTTTTACATTCTGCTCCACCCTTTCATTTTAAAAGGAAACCTTTCAACCAAATGACATGGCACTGTTACCAGGAACACCATCTTGGTTGAAACTTGACATCATTCAGAATCCATTTGATAGATTGTTttttcttctccccccccccagtataaaCTAGTCAGATTAGTGATTACATCAAGGATGGGGGAGATTCTGTAAATTAGCGGTGGTTTTTACTCATCAAAAAGTCTTCAGAGATATATTCAGTCCAGCTCTTT
>TU2620404
GGGAGAGACACACGAGGTGAAAGCAAACAAAAACAGACCATCGTTTGGTTCAAAGCAAAAATACCACCAACCATAATTAAAACACACTTATTTAAATGTTAAAATAGCAAGGTAGTAGCCTATTTTAGTCCCTGGTACAGTCAGACCACCAGTAGTCTGACTATCATCTGTTTTACATTCTGCTCCACCCTTTCATTTTAAAAGGAAACCTTTCAACCAAATGACATGGCACTGTTACCAGGAACACCATCTTGGTTGAAACTTGACATCATTCAGAATCCATTTGATAGATTGTTttttcttctccccccccccagtataaaCTAGTCAGATTAGTGATTACATCAAGGATGGGGGAGATTCTGTAAATTAGCGGTGGTTTTTACTCATCAAAAAGTCTTCAGAGATATATTCAGTCCAGCTCTTT
>TU2620407
GGGAGAGACACACGAGGTGAAAGCAAACAAAAACAGACCATCGTTTGGTTCAAAGCAAAAATACCACCAACCATAATTAAAACACACTTATTTAAATGTTAAAATAGCAAGGTAGTAGCCTATTTTAGTCCCTGGTACAGTCAGACCACCAGTAGTCTGACTATCATCTGTTTTACATTCTGCTCCACCCTTTCATTTTAAAAGGAAACCTTTCAACCAAATGACATGGCACTGTTACCAGGAACACCATCTTGGTTGAAACTTGACATCATTCAGAATCCATTTGATAGATTGTTttttcttctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2620406 False 620 lncRNA 0.38 1 5698936 5699555
TU2620405 False 486 lncRNA 0.38 1 5699189 5699674
TU2620404 False 427 lncRNA 0.38 1 5699248 5699674
TU2620407 True 308 lncRNA 0.38 1 5699248 5699555

Neighbor

gene id symbol gene type direction distance location
LOC110489437 LOC106570711 coding upstream 21032 5645183 ~ 5677904 (+)
slc6a18 LOC106570711 coding upstream 57389 5632297 ~ 5641547 (+)
LOC110489357 slc6a19 coding upstream 83563 5592112 ~ 5615373 (+)
LOC110513117 LOC106589108 coding upstream 173867 5509001 ~ 5525069 (+)
dlgap3 dlgap3 coding upstream 286311 5113201 ~ 5412625 (+)
wipf3 NA coding downstream 24596 5724270 ~ 5749736 (+)
LOC110489352 LOC106570724 coding downstream 119406 5819080 ~ 5856740 (+)
LOC110520219 NA coding downstream 346916 6046590 ~ 6047475 (+)
LOC110487836 LOC106570725 coding downstream 410705 6110379 ~ 6203899 (+)
LOC118946494 NA coding downstream 694641 6394261 ~ 6398382 (+)
G2291311 NA non-coding upstream 1158 5697520 ~ 5697778 (+)
G2291286 NA non-coding upstream 69711 5628628 ~ 5629225 (+)
G2291266 NA non-coding upstream 131273 5567298 ~ 5567663 (+)
G2291265 NA non-coding upstream 131642 5566974 ~ 5567294 (+)
G2291263 NA non-coding upstream 135333 5563330 ~ 5563603 (+)
G2291313 NA non-coding downstream 339 5700013 ~ 5700617 (+)
G2291321 NA non-coding downstream 20133 5719807 ~ 5720039 (+)
G2291338 LOC100286654 non-coding downstream 74176 5773850 ~ 5779668 (+)
G2291341 NA non-coding downstream 84491 5784165 ~ 5784756 (+)
G2291359 NA non-coding downstream 167928 5867602 ~ 5872088 (+)
G2291219 NA other upstream 226783 5471563 ~ 5472153 (+)
G2291194 NA other upstream 280698 5416832 ~ 5418238 (+)
smim12 smim12 other upstream 680622 5014549 ~ 5018314 (+)
G2290455 NA other upstream 1150092 4546904 ~ 4548844 (+)
G2291490 NA other downstream 448150 6147824 ~ 6148246 (+)
G2291498 NA other downstream 461404 6161078 ~ 6161719 (+)
G2291541 NA other downstream 608462 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1182703 6882377 ~ 6883166 (+)

Expression


Co-expression Network