G2292289


Basic Information

Item Value
gene id G2292289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6858402 ~ 6862847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2621737
AAAAAGTacccgaaactttgaacatcccacggagaaccattaaatccattattaaaaaaatggaaGGAATAGGGCACCAtgacaaacctgccaagagagggccgcccaccaaaactcacagaccaggcaaggagggcattcatCAGAGAGGCTACAAAGAGACCAACgttaaccctgaaggagctgcaaagctccacagcggagattggagtatctgtccataggaccactttaagccgttcactccacagagctgggctttatggaagagaggccagaaaaaaagccattgcttaaagaaaaaaataagcaaatacgtttggtgttcaccaagaGGCATGTGGAAGaagatactctggtcagatgagactcaaattaactttttggccatcaaggaaaacgctatatATGgcccaaacccaacacctcacatcacccTGAAAactccatccccacagtgaagcatggtggtggcagcatcatgctgtgggtatgtttttcatcggcagggaaactgggaaactggtcagaattgaaggaatgatggatggcgctaaatacagggaaatgcttgagggaaacctatttcagtcattcagagatttgagactgtgaTGGAGGTTCACCTACCAGCAGTacaaagcatactgctaaagcaacactcgagtggtttatggggaaacatttaaatgtcttggaatggcctaatcaaagcccagacctcaatccaattgagaatcggtggcatgatttaaagattgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaaggatgtgcaaaaatcccagtggccaAGATGTGCCAAGCCTATAGAGACATTACAGCTGtgattgctgcaaaaggtgtctctacaaagttttttttgtcttatttcttgtttgtttcacaataaaaacatattttgcatcttcaaagtgataggcatgttgtgtaagtcAAATGATACAAATGGTTGTaaaaattccaggttgtaaggcaacaaaataggaaaaatgccaagagggtgAATATTATTGACCAAATTAGTGGCGGGTggccactttgttattgttttaactGCTGATTCCAGGTACAAAAACGCCTCCTAAAGGTGCCCAGTCATTCTGAATGGGGGCTAATGAAAATGACACTACAGTGACCTGGAAATACGATTACGTTGCTAACGTAGGCAAATCATTTGTAGGAAAACAACTTTGCCatcatttttttacctttattttattttacttacTTTattttatgcaagtcaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgagctcggggatttgaactcgcaaccttccaattattagcccaacactctaaccactaggctacccctaaAGATCATTATGATGTTGTAAAATGTACTTTAGACAGTGGGCAATGTGATCATGTGGTCAAGAGCTAGCAAAGTTCATACAAAATAACTAGCAATGCTAAGGTTAGCTTGCAAAGTTCATAAcaaatagctagcaatgctaaccTTAGCTAGCAAAGTTTATAAAAtatagctagcaatgctaacgttagctagcaaagtTCATAAAAAAATTGCGAGCAATGATACATTTAGTCCTCTCAACCTTGACAAAAGGTTGTCCTATTAATTATTTGCCTCCTTCTTTGAAAATCCATCCACATTAATGCACTTTAGAAGAAGTCTTCTGTAGCTCACATTAATAATGCACCAAGAAGAATACCCAGTAGTGCATCAGTCCTAAAACGAACGTTAAAAAAACAATATTGTGACAAAACGTGCAACCCATTATTAGTTATTAGTTATGCTTTTCTGTGTTTGCCTACGGAGCAGGGGAGGGCAACTACGTAGCTGAATCAGACTTGCAACCCATTATTAGTCATTAGTTATGCTACTACGTAGCTGAATCAGGCGTGCAACCCATTATTAGTTATTAGTTATGCTACTACGTAGCTGAATCAGGCTTGTTAGTGATGGGCTGGACCAAAACACTGCATGCACTGTAGCTCTTGCAGGAAAGGTTGCATCCCAaaattgcaccatattccctatttaaggcccattagggctctggtcaaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatacaggggatagggctctggtctaaagtagtgcactatatagggaatagggctcaggtttaaagttgtgcactatatagggagtagggctctggtttaaagttgtgcacaatatagggaatagggctctggtctaaagtagtgcactatatagggagtagggctctggtttaaagttgtgcactatatagggaatagagctctggtctaaaatagtgcactatataaggaataggcctctggtctaaagtagtgcactatatagggaatagggtgccatttgggacacacaatgCTGCTCTCAGGGGGTCTTGTGATACGCAGATAGAGGACGGATGAGATCGATACAGAAAGCTTTGCTCTCTTCAGCCTACAGCAATGACTCAAGTGGATTTCCCACTCCATGTTATCTGTCACTCCCTCTTCCCATTAAACCATCcaaccctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtgaCTCCCTCTTCCCATTAAACCATCCAATCCAATCTCTCTCTGTTGTCACTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgctcttacTCTCTCAGGACATAATCtggagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacataccagctagatctactgtctctattatattatgacagaccagatagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccaactagatctactgtctctattatattatgacagaccagttagatctactgtctctactatattatgaca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2621737 True 3780 lncRNA 0.40 2 6858402 6862847

Neighbor

gene id symbol gene type direction distance location
LOC110487847 LOC106570705 coding upstream 181428 6651464 ~ 6676974 (+)
LOC118946494 NA coding upstream 460323 6394261 ~ 6398382 (+)
LOC110487836 LOC106570725 coding upstream 654503 6110379 ~ 6203899 (+)
LOC110520219 NA coding upstream 810927 6046590 ~ 6047475 (+)
LOC110489352 LOC106570724 coding upstream 1001662 5819080 ~ 5856740 (+)
LOC110487851 LOC106570704 coding downstream 54142 6916989 ~ 6943817 (+)
LOC118946508 NA coding downstream 72505 6935352 ~ 6936494 (+)
LOC110487852 LOC106570703 coding downstream 153383 7016230 ~ 7044759 (+)
LOC110487858 LOC106589075 coding downstream 664516 7527363 ~ 7563955 (+)
LOC110487859 LOC106570693 coding downstream 709003 7571850 ~ 7590800 (+)
G2292340 NA non-coding upstream 7578 6850394 ~ 6850824 (+)
G2292315 NA non-coding upstream 54449 6803441 ~ 6803953 (+)
G2292277 NA non-coding upstream 107247 6750825 ~ 6751155 (+)
G2292225 NA non-coding upstream 167156 6691024 ~ 6691246 (+)
G2292078 NA non-coding upstream 174517 6677453 ~ 6683885 (+)
G2292342 NA non-coding downstream 14416 6877263 ~ 6877893 (+)
G2292344 NA non-coding downstream 17845 6880692 ~ 6881469 (+)
G2292357 NA non-coding downstream 82497 6945344 ~ 6946766 (+)
G2292356 NA non-coding downstream 84052 6946899 ~ 6947478 (+)
G2291541 NA other upstream 541705 6308136 ~ 6316697 (+)
G2291498 NA other upstream 696683 6161078 ~ 6161719 (+)
G2291490 NA other upstream 710156 6147824 ~ 6148246 (+)
wipf3 NA other upstream 1108944 5724270 ~ 5749736 (+)
G2291219 NA other upstream 1386249 5471563 ~ 5472153 (+)
G2292347 NA other downstream 19530 6882377 ~ 6883166 (+)
G2292666 NA other downstream 327405 7190252 ~ 7190850 (+)
G2293172 NA other downstream 983832 7846541 ~ 7847462 (+)
e2f3 LOC106570699 other downstream 1051777 7897661 ~ 7920212 (+)
G2293430 NA other downstream 1212840 8075687 ~ 8078381 (+)

Expression


Co-expression Network