XLOC_004180



Basic Information


Item Value
gene id XLOC_004180
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28196957 ~ 28200504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008803
aAGATATCCAAAGACACCGTTTTtgaagacagcagagAGTCACAGAGGACGAGCCCATCAGCAGGGGAACAGATATGTATGATTTATTTGTCACGTGTTTGGAACCGCACAATAGAGAAGAAACAACCGGTGGAGGGCTCTGATTTTATTTGAAGATGGTAGAGAAATTTACGAACAAACTTTAATGTactctgggtttttttttttt

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008803 True 208 lncRNA 0.39 2 28196957 28200504

Neighbor


gene id symbol gene type direction distance location
XLOC_004178 si:ch211-220m17.4 coding downstream 110033 28052699 ~ 28086924 (-)
XLOC_004177 ece1 coding downstream 146398 27919702 ~ 28050559 (-)
XLOC_004176 eif4g3a coding downstream 279227 27828212 ~ 27917730 (-)
XLOC_004175 cstf1 coding downstream 369424 27817301 ~ 27827533 (-)
XLOC_004174 NA coding downstream 387242 27800859 ~ 27809715 (-)
XLOC_004181 NA coding upstream 218372 28418876 ~ 28424141 (-)
XLOC_004182 NA coding upstream 313238 28513742 ~ 28522344 (-)
XLOC_004183 BX649345.1 coding upstream 321860 28522364 ~ 28525496 (-)
XLOC_004184 dhrs3b coding upstream 390229 28590733 ~ 28614608 (-)
XLOC_004185 klhdc7a coding upstream 433213 28633717 ~ 28639498 (-)
XLOC_004063 CR854846.1 misc downstream 12069279 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15505266 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15575190 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15605661 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15683695 12512966 ~ 12513262 (-)
XLOC_004173 BX601648.1 non-coding downstream 390190 27783758 ~ 27806767 (-)
XLOC_004169 NA non-coding downstream 571492 27543578 ~ 27625465 (-)
XLOC_004167 NA non-coding downstream 688984 27502205 ~ 27507973 (-)
XLOC_004165 CR847934.1 non-coding downstream 1448528 26748292 ~ 26748429 (-)
XLOC_004187 NA non-coding upstream 884862 29085366 ~ 29088626 (-)
XLOC_004188 NA non-coding upstream 899423 29099927 ~ 29319919 (-)

Expression



Co-expression Network