G2293831 (LOC106570681)


Basic Information

Item Value
gene id G2293831
gene name LOC106570681
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8511906 ~ 8515666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2623604
cagtcacccacccacccagtcacccagtcacccacccagtcacccagtcacccacccagtcacccagtcacccagtcacccacCCAGGCACTGAGAAAGGTACCCGAAAACACATACAGGGTATGGTCTCACTTTGTGCTAGTGGCATCACGTTGGACTAAAATATTTAGGGGAAGTGttactttctgtctgtctctaaaaACTACAGCGCTAAAAATTCCTTCCTCTTTGACATTGTTTTACAAGAAAAAAGATGAAACCATATAGCAGAACCagcaaaaaaacaagaaaacaaaACAGAGAACTGCTGATGACAGGGTTTGGAGATTTGACCGTTGATATTGTTTGAGGAGTTTAGTACATGTCAGGAACTACGTTTCACGTAATACTGGGTTTACGGTGAACAAAAATGAACAGCTAGGAAGAATATCCTAAGTGTTGTCAATGCGGTTAGCAATTTGCTAAAGCACAGTTAAAGTGACGGTTCAGACATAGCAAGTGTAGGGGTCATTGAGGAAGCAGGGGTCATTGATCAGGGGTCATAGCAGGGGTCATTGAGCAGGGGTCATTGAGGAAGCAGGGGTCATTGAGCAGGGGTCATAGCAGGGGTCATTGAGGAAGCAGGGGTCATTGAGCAGGGGTCATATCAGGGGTCATTGAGCAGGGGTCATTGGGCAGGGGTCATTGAGCAGGGGTCATTGAGGAAGTAACTGGATCATCAGTGAATCAATTTAaacggtgtcccaaatggcaccctattccctacatagtacactacttttgaccagaacccaatgggccctagtgcactaaatagggaatagggagccacttGGGACACATTGAAAGCTTATAGCCGGAgctgggggaaaaaaagaaaaaaaagttggATAAATGTATGTATACACTTATACGGCTTGTCCAGCATAACATATGGGCTCCCGAGTGATGCTTGAGGTCActgcagacaccctggttcgaatccaggcggtaatcacaaccggctgtgattgggagtcccatagagtgacgcacaattggcccagcgtcgtccgggtttggccggtgtaggtcgtcattgtaaataagaatttgttctgacttccctagttaaataaaaggtaaaacaataaacaaatgatTATTTTTTGACACAATCTTAAAAAGTACTACCTCCTCCAAGCTCTAAACATTGGAGCCCAACTAATGCCAAATGTTCAGAAGGGCTCAAATAGAATGAATTGTACTTGACTGTTAGTTGTATTATATAACACATTAATCATATTATGTTTTGGTTATAGGGTTGCAAAACAATGGTAattttccccaaattcccaggttttccaaaaATTCCAGTTGTAGGATTCTAAATTTCCAGTTTATTCCTTCCTGATTCCGGGAATTTTCCAACCAGGATTGCTGGAAACCTGGGAATTTTCCAGTTAAAACCTGTTTTCTCCAGTTTACATTCCCTATCTGGGGCTTGTCGTTTTGGacacctctgtctgtctcatcaTCTGTGAAATCTCTTCCGACAACAGCTGTGGTCGAATATTACAACAAACTGTTTCAGTGTTGCTCAGGCTCAGCTTTATGAATTACCCAGTCAGGCAACGCTTCATTTGCTGCAATCAGGACAATTTAAACACTTTCTAGTGAAGGACGAAAAGCCTGCAGCCCACACACAAACAGATGATCTTGCAGCTGGAATACATCCCAACTCTAAAGCAGTGTCTTGAAAAGAGAAATAGGATCCTCTAAAACATAAAGACATTGCATGGGATGGAAAAATAGTTTGGAAATTTACGTTGAAGTTGATCTGGTAAATGTTTTTTGACAAACAGGTCCTGATGTCTCTGTACAATCACAAGCGTGTCTTACAGATTCTCCTGTAATGTACAAGGCACTGCTGCAGTATACACATATTATTGGtatataatacattttttaaattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggccgaggaacagtgggttaacagccttgttcaggggcagaatgacagatttgtaccttgtcagctcgggggtttcgaacttgcaaccttccagttactagtccaacgctctaaccactaggctaccctgccacccataACATTAGCACCTCTCTTCTATTCCTCTCTAGACACCTTAAATATATACACACCAAATCCCCTTGTGGCTGATTTATGCATCAGGCTCTAAGGTTTAGAAGACACACAACTGTTTACTGTATTTGAAATTATAGACCGTGGGTTGTTCTTATTTCTCAACAAATAAATATGGAATGATTGCATTTATTGGAcaccagggggagggagagacagaaggacgGAGAGCgtgatagagccagagagagtgagagcgagagagagtgagagagcgagagagcaagagagagagtgagagagcgagagagagtgaaagagaatgtgagagagagagtgcgagagaatgagagtgagagagccagagagagtgagagcgcgagagagagtgagagaacgagagaaagtgagagaagagagagaagagagagagagagagctcaattTCAATTGGTCTCTTCAGAAGCTATCCCCCTCTCTTTAAGTTGTCTTCAGGTACGGCCTCTCTGATCTTTCTCATTTAATAAATTTGATCACCGTTTGACTCCTGTTGCCCCCTCTacctatcactaaccctaaccctctgatCACTACCGTACCTATCACTAACCCTCTGATCACTACCCTGCCTATCACTAACCCTCTGATCACTGCCCTGCCTATCACTAACCCTCTGATCACTACCTTATCTATCACTAACCCTCTGATCACTACCCTGCCTATCACTAACCCTCTGATCACTACCCTGCCTATCACTAACCCTCTGATCACTGCCCTGCCTATCACTAACCCTCTGATCACTACCGTACCTATCACTAACCCTCTGATCACTACCCTGCCTATCACTAACCCTCTGATCACCACCCTGCCTATCACTAACCCTCTGATCACTACCTCACTTAGTTACTGCCTCTCTGCCTTCCTCTACCCCGTCTCTTACCCCCTCACCTGATTACTTGGCATTCATTCTTCATTCACTAACGTATACCCCCTTTCAAacactcttcctcttctcctatAGATCACTTGTAGAGGAGCTGTAACCGGCTGGTGTGGCAGTTGTTTCTACTGATCTTCCCATCGGGCTGATAGAGGTTGGAGGAGttggagaatgatggagggagggagtggttgTCTGAGGTGGGGTTGGGGTACCCCGGTGGGGGAATGAGGGATTTGGGGTCATTCGAGGGGACAGGGAGAAGGGGCGTGCTGTGGTTCAGGTTGACTGTGGAGGGTCGTCTTCGGGAGCGGAGGGCTTGTCGCTCCACCAGCTGGTTTCGCAGCTCTGACACC

Function

NR:

description
gamma-aminobutyric acid type B receptor subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2623604 True 3437 lncRNA 0.45 2 8511906 8515666

Neighbor

gene id symbol gene type direction distance location
tnfa LOC100136509 coding upstream 5906 8503624 ~ 8506000 (+)
si:ch211-152p11.4 LOC106570678 coding upstream 91142 8410404 ~ 8420764 (+)
LOC110487863 LOC106569297 coding upstream 309546 8197381 ~ 8202360 (+)
e2f3 LOC106570699 coding upstream 592456 7897661 ~ 7920212 (+)
LOC118946479 NA coding upstream 632330 7878210 ~ 7881862 (+)
LOC118946524 uap56 coding downstream 311244 8826910 ~ 8833518 (+)
LOC110487872 LOC106570657 coding downstream 375973 8891639 ~ 8896196 (+)
LOC110489365 LOC106570660 coding downstream 391784 8907450 ~ 8934029 (+)
LOC110487875 LOC106570662 coding downstream 418464 8934130 ~ 8942477 (+)
stx12 LOC106570663 coding downstream 427332 8942998 ~ 8954950 (+)
G2293829 NA non-coding upstream 136 8510872 ~ 8511770 (+)
G2293828 NA non-coding upstream 1306 8510275 ~ 8510600 (+)
G2293746 NA non-coding upstream 71859 8439663 ~ 8440047 (+)
G2293738 NA non-coding upstream 85290 8425903 ~ 8426616 (+)
G2293725 NA non-coding upstream 107541 8404158 ~ 8404365 (+)
G2293853 NA non-coding downstream 56849 8572515 ~ 8573927 (+)
G2293884 NA non-coding downstream 113890 8629556 ~ 8630685 (+)
G2293900 NA non-coding downstream 190316 8705982 ~ 8707683 (+)
G2293901 NA non-coding downstream 195959 8711625 ~ 8711973 (+)
G2293942 NA non-coding downstream 275435 8791101 ~ 8876464 (+)
G2293677 NA other upstream 161223 8350213 ~ 8350683 (+)
G2293464 NA other upstream 405897 8105628 ~ 8106009 (+)
G2293430 NA other upstream 433525 8075687 ~ 8078381 (+)
G2293943 LOC106570655 other downstream 328347 8844013 ~ 8847252 (+)
G2294081 NA other downstream 579126 9094792 ~ 9103186 (+)
G2294452 LOC106570648 other downstream 819669 9335335 ~ 9337755 (+)
G2294925 NA other downstream 1614450 10130116 ~ 10131651 (+)

Expression


Co-expression Network