XLOC_004181


Basic Information

Item Value
gene id XLOC_004181
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28418876 ~ 28424141 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008804
TgggctttttttttctcatttttagaaaataaaccAATAACAATATTACAAATAATGAAATTGTTACATCATTCACAGGGTTACagtcaaatgtacattttatacaGCGAAACAGGACCTCCCATCTCCGTCACAGTGGTCCAGGTGGGCAGTGCTCTATTtgggcaagagagagagagagagagagagaggtctgcTGCCCTGTAATGAAAAGCAGGGCTGAGAGACATGCGGAAGAACACACTACTGCCTTCCTAACAGCAGAGGGAGCTGCGGCCCTACAGCCACTACAGCTCTGCTCGGGGAGCCATTTTCTCTCCCAACAACTTCCCACCATATTTGGAGGATGCAGGCAGAAATATGGACCAATGAGAGGGAGCCAGAGCCAGCTTGTATTTACGTTCACAGTCACACATAATCATCATAATAACGGTTTTGCATTGGTATTATGCTTCGGCGGTAGCTGCGAGCATATGCTGTTCACAGCTTGCTGTCACCCAGCTTTCAACAAAATGCTTTAAATGGTGCACGGTCACGTTTTTGCTCGCCAGAAAGAACATTTGCAGTTCGCATGTCCACATAACGGCAGCTTATTGGTCATTTTCACAAGAAATAGAAATTCCTATGTGCCATCTTTCCCAGCACTGTGTTGTGGTAGAAAGCTTGCATTTAAGGTGGTAATCCATGTGAAAAAAATAACAGAAGTGCTTAAATCACTCAGCGTGACATTCTTTCACACTCTCAAGGCCACGTCTCATTTGTCTGTGGTCTACGAAGTGTTCTGTTAAACGACAAATGAGAGACAGAGGCGTATGAGGTAATTAGTCCCCTACTGAGAAACAAACTTGAACGGTgggaaaaaaaagtgaattaCATTAGATGAATCAGATGAAATAGTCCAATATAAATACAGCTTTAATGTGTAGCAAATGTCAAGCGTGTCAGAATCTTTCAACGTATCAATATCTTAAAACAGAAAGGCTCATTGGCTGCTAATGTTCCTTTGGATCTCTCGATGCAAAGTACCAGAAAGTCGGTGCCAAACAGCGAGAGAAAAAcctctttttatttttctgaaatgaCACATTTCACTGGAAGGAAAAGAAGTCGGGGATCAGGGATACAGGATATCCCTTCAGCACTGGATTTCATTCAAAGCTCTGTTAATCCTGAACTTTTAGGCAGATTTAAAGCATGCCATAACTTGTGGGTAGTACCTCTAAATATTGCTACTGCCAtgaatttatttgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtggatcccGCAGTTTTCGGTGACAACGATTGTCCTAGGAGGGTGAAGGAGAAAGCGGTGTTATTCTGAGGAAGACGAGGGATTCAAGACCTTAGTCTCACAGTGCAGCAGTGACACTGAGACGCCATTAAATATTGAGAGGATGTGTGCTGGACAGACAGGAAGGTAAACATTGGTGTCTCTCAAGCCTTTTGAATTGATCTCTACCCGGGATGGCCTGTCTGCTGGATGCCCAAACACTGCCTGATAATagtcttttttttctaatggaaGCATCATGTAATGGGAAGAACAGAGAAACGGTCAACACCATCTGATCAGAACTTTATCAGCACTTTGAGATTCAGAATTTAGCTATACTGAACCGACCTCACAGTACTGTGTTTTTAACAGATGCATGTCAACACTGAGGTTATGGAAATAAAGCGAGAGCCCCTCGTCGACCGAGCGACAAGTATATTGTTATCCACAGTGACTGTAATGCTGGTACACGGATGTACCTGCATGTGCAAACACACTcagaaacacacgcacacatacactccAGCATGGATGAAGATGCCTCCGGCCTGTTCATCTCTACAGCTGCTTCATCTCTCAGCCCGTCCTAGTACAAAACGAAAAGCCCAAAATAAACAGACAATAGCAACTCTCCATcaacaacacattaaaaaaaaaactaatctgtaCACTAAAATCCAACACAGCTTTGAGAAAAACCTCTCAGGCGGGGGGAGTTTCTGATTcagaatattatatacagttttaCGTCAATGCAGGTGAAGTATCTTACGCAATTACGAATGCTTTCTCTGTATAAAATaaaacctatacacactcatttacattttGTGATTCGTTAACGAAACTCCAGCTTGTTTTTTAGATGTCAGATTTAATCTTGACCCCCCGATCGGTGAATGTAACCTGTTTAAAAATGTCGTAACAGCATCCTTATATAAAACTATGCTTCACAATGACTTTCCTGTTATGAAAATGTCCTCTAACTCTTTATCAGATATTAAAACTCCTAAACACCATATTACAAAACGTTGATCTTTTAAAAGAAATGATTTTGGTGGCAAAAATATAAGCATATCGACACAGTGATCTGCGACGTGTATCAAATCCAAGCATCCCCTGAAATCATAGTTTTGCACCGCACATGGGCTCCatacgcacacatgcacacactcgcAAGGCAGGGATTCGAGCATAAAAGAAGAGCGGAGATGTGAGGACCACACCATACGTGCACTCGGGGTCCTTCTCTGGTTCACCAAAAGAGCGAGCTAAAAAGTTTTCTTTATGGGGGAGAACATCTTACGCCGTCTTTCAAACTAAATCATCTTAGCCCATGACAAAAAAAGGAAGAAGAATATAAAAGATGACCCCCTCGAGTCACAAACGTTTGCGCACTCTAAAGAAAGTCCATCAAATGTCAATGTAGCTCAATCTAATACTCAAAATGAAGCTAAATGTTGGACTGCATCAGGCTTGTACTGATGACCTCACGACGTCAAGTGCATCTGATATGTACAGGACGAGGTACAAAGAGATGATGCTCAATTTTGGCAGGCTGTTTTATGACATCTGTAAAAGATTTCTGTTTTCCTCCCCCCGAGCAATGAGAAATCTGCACCACAAATTGCAACACTGTGATAACTGCATTTTTTTTCCTTcctctgtttgtttgtgttgatGTAGTTTGAATGACTGAAGTCTCATGTTTTCTTCAAGGCAGAATCAGCTGCCAGAAGGAAGTGCCATTTCATGGTGTTCACATACTTTTCCCCTGACTGTCAGCAAGGGGAGAGGGATTACGGTCCCGCAGGTTgtcccatgtgtgtgtgtgtgtgtgtatccactGAGCAGACAGTCATTATTTCTAGTCAGGATTTTCCTAAAATATTCAAAAAGAAAATCTCAGAAGCATGTATCATGGGgtgaagtttgtttttttatctccTGTTTCTTCATTGCCCTTTTAAAGGGTAGCCTTTTAATTCAGTCCACCGTATTCAGTCTGCAATCTATACATTTCATATAGATTCCTTATGTTTTCATAGCTTTAAAAATTCTTtacaaaaaaactctttaaaaaaatgaagacgATAAAAAAAGAATAACTGGAAAGGAACAAAATGAGAAGGAAATAGGGGCGGGGCCTATTGCTGGCAGACTGAAGGGTCATCCTGTGATTGGTGGTGGCTAAAACTAAACGATCAGGTGTTGTGACCATATTTTCCAGACGCAGCTTTCCCCGAATCCAGCCCATTAGGGTGTCTGGGGGTTAATGGGGGAGTCAGATGACACAGATGGAGAACGAgagtgtttgggaggagggggcaGGTGGGTATCCTAGGTGGTCCAGAAGGAAAATCAGGCTTAGGGGTCTGCGGTGGCCGCCCCATCCCTTCACGCTGGCTCTCCGCCTCCTCCTGTTGTCCTCCGCCCAGTCTAATCGAGGGCACGTGGTCAAACCTCTACCGACTGGATCTGGTTCATCTGAGCCCTCATCATCTGAACGCTGTTGAGGATCTTCTTCTGATGACCTGCTAGTGTCACTCCGACCCGGAGAATGTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008804 True 3867 lncRNA 0.43 2 28418876 28424141

Neighbor

gene id symbol gene type direction distance location
XLOC_004179 lactbl1b coding downstream 28775 28127199 ~ 28390101 (-)
XLOC_004180 NA coding downstream 218372 28196957 ~ 28200504 (-)
XLOC_004178 si:ch211-220m17.4 coding downstream 331952 28052699 ~ 28086924 (-)
XLOC_004177 ece1 coding downstream 368317 27919702 ~ 28050559 (-)
XLOC_004176 eif4g3a coding downstream 501146 27828212 ~ 27917730 (-)
XLOC_004182 NA coding upstream 89601 28513742 ~ 28522344 (-)
XLOC_004183 BX649345.1 coding upstream 98223 28522364 ~ 28525496 (-)
XLOC_004184 dhrs3b coding upstream 166592 28590733 ~ 28614608 (-)
XLOC_004185 klhdc7a coding upstream 209576 28633717 ~ 28639498 (-)
XLOC_004186 igsf21a coding upstream 218772 28642913 ~ 29082429 (-)
XLOC_004063 CR854846.1 misc downstream 12291198 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15727185 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15797109 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15827580 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15905614 12512966 ~ 12513262 (-)
XLOC_004174 NA non-coding downstream 609161 27800859 ~ 27809715 (-)
XLOC_004173 BX601648.1 non-coding downstream 612109 27783758 ~ 27806767 (-)
XLOC_004169 NA non-coding downstream 793411 27543578 ~ 27625465 (-)
XLOC_004167 NA non-coding downstream 910903 27502205 ~ 27507973 (-)
XLOC_004187 NA non-coding upstream 661225 29085366 ~ 29088626 (-)
XLOC_004188 NA non-coding upstream 675786 29099927 ~ 29319919 (-)
XLOC_004190 NA non-coding upstream 1113841 29537982 ~ 29544989 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G433288 NA non-coding CI01000306 null 4753007 ~ 4758402 (-)