G2294452 (LOC106570648)


Basic Information

Item Value
gene id G2294452
gene name LOC106570648
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9335335 ~ 9337755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2624382
cgacaagacaaaaacaactaAACATTCCAGATCAGGCATTTTTTATTTAAGTAACTGGGTAAAAGGATTTCCCACAAAGTGAAAAGATGCAACAATGGAATAAAACAGCTACCACCCTCGCACAACATTGACAGCACAGTATGCTAGTATTGATACAAAGTTTAAGACACTTTACTATAGCACATTCCCATTTCAACTTAGAAAAATCTATCCAAGCAAATACCCTCGAACTTCCTTCACATATTTAATATTTTACAAAACACCTTGATTAAAGAGACTACTGGAAAAAGAAGCAGAAGGACCAACAAAACACTGTATATTTAAAAGAAATGGGGAATAGTGAGTGAAAGACACTGAGCATGAggagcctgttttttttttttctacaacTATTTTATCAAAAAACGAAAAGGGACAGACGCAGGGGTGGGGGATAGGGGACGAGAACAaacaggggagggggaggggggcacgACTGCTGGGTTATGTTGCCATCCCAGCTCAGGACTCTGATAGAGAGCGGGAGCGAGAACGAGACGCAGAGCGAGATTTGGAGCGGGATTCTGAGCGGGAGACGGAGGGGGAACGGGAGCGGGCTTTGGccggggagggagatggagatttGGACTTTGACTTGGGTTTGGATTCGGCAGGGGTGTGGGAGCGAGAGCGGGAACGGGCGGCCCCTTTCTCAGCTGCAGCTCCCTCGTCATCGCTCTTGGCCGGCTCGCGGCTCTTTGAACCCGACTTCCGGGAGCGATCCTTAGCCGCTGATCTGGAGCGGGACCTGGATCTAGACTCCTCCTTCCGGCTCTTCTTCCCTTCTTTCTTGCTGCTCTTTTTGCTCTTGCTGCGGCTCCTGCTGCGGCTCTTGCTGCGGGCCCCGCGCCCCTCCTTGGCCTTGTGGGCACCGTTGGTGCGCTCCTCATCTCTGCTGCCCTTGGTCTTGTCCTTCTTGCTGTGGGAGCGGCTACGTGAGCGGGAGCCAGCACCCCTGGAGCGGGAGCGACTGCTGCTGTCACTGCGGCTCTTACGGGACCTACGGCTCCTGGAGCGAgacctggaGCGACTGCGAGAGTAAGAGCGCTTGCTCCGCTTGGCCCCGGGGCGGTCCTCAATCAGACGGATCTTCCTGCCGTTCACCTCTGTGCCGTCCAGCTTCTCCAGGGCTCTCTTCATGTCAGAGTACAGCCTGAACTCTATCACGCCCTCGTTCCTGCGCCCCTTATTGGTGTCAGCATACGTCACCTCACCCGCCTGCCTCATGT

Function

NR:

description
serine/arginine-rich splicing factor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2624382 True 1268 TUCP 0.53 3 9335335 9337755

Neighbor

gene id symbol gene type direction distance location
LOC118946539 NA coding upstream 10333 9324340 ~ 9325002 (+)
LOC110489366 LOC105012323 coding upstream 172839 9046596 ~ 9162941 (+)
LOC110487879 LOC106570673 coding upstream 315866 9005647 ~ 9019469 (+)
stx12 LOC106570663 coding upstream 380385 8942998 ~ 8954950 (+)
LOC110487875 LOC106570662 coding upstream 392858 8934130 ~ 8942477 (+)
trnap-agg-161 NA coding downstream 16062 9353817 ~ 9353888 (+)
trnap-agg-163 NA coding downstream 19336 9357091 ~ 9357162 (+)
trnap-agg-165 NA coding downstream 25294 9363049 ~ 9363120 (+)
trnap-agg-167 NA coding downstream 28568 9366323 ~ 9366394 (+)
trnap-agg-170 NA coding downstream 37790 9375545 ~ 9375616 (+)
G2294449 NA non-coding upstream 4627 9330259 ~ 9330708 (+)
G2294448 NA non-coding upstream 6681 9327450 ~ 9328654 (+)
G2294421 NA non-coding upstream 67283 9266756 ~ 9268052 (+)
G2294412 NA non-coding upstream 83583 9251547 ~ 9251752 (+)
G2294410 NA non-coding upstream 84050 9251070 ~ 9251285 (+)
G2294457 NA non-coding downstream 7006 9344761 ~ 9345078 (+)
G2294458 NA non-coding downstream 9063 9346818 ~ 9347314 (+)
trnap-agg-172 NA non-coding downstream 41154 9378892 ~ 9379108 (+)
G2294462 NA non-coding downstream 43099 9380854 ~ 9381293 (+)
G2294472 NA non-coding downstream 72087 9409842 ~ 9410070 (+)
G2294081 NA other upstream 232149 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 488083 8844013 ~ 8847252 (+)
G2293942 NA other upstream 539833 8791101 ~ 8876464 (+)
G2293829 NA other upstream 823594 8510872 ~ 8511770 (+)
G2293677 NA other upstream 984652 8350213 ~ 8350683 (+)
G2294925 NA other downstream 792361 10130116 ~ 10131651 (+)
LOC118946540 NA other downstream 981097 10318805 ~ 10323588 (+)
LOC110487904 snrpd1 other downstream 1177199 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1947738 11285493 ~ 11290303 (+)
G2296278 NA other downstream 2225792 11563547 ~ 11564590 (+)

Expression


Co-expression Network